Factsheet for VIT_10s0071g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36171	Soybean	nucleus	51.46	61.5
GSMUA_AchrUn_...	Banana	nucleus	50.63	60.8
KRH75844	Soybean	cytosol	28.87	60.53
KRG90584	Soybean	cytosol, nucleus, plastid	51.46	58.85
Solyc04g008820.2.1	Tomato	nucleus	51.46	57.21
PGSC0003DMT400065103	Potato	nucleus	53.14	52.26
Bra026498.1-P	Field mustard	nucleus	51.46	50.0
CDY16851	Canola	nucleus	50.21	50.0
CDY64875	Canola	nucleus	49.37	49.17
Os08t0101100-01	Rice	nucleus	41.42	48.77
Bra029371.1-P	Field mustard	nucleus	48.95	48.15
CDY46957	Canola	nucleus	48.95	48.15
AT5G23420.1	Thale cress	nucleus, plastid	47.28	46.89
Zm00001d052749_P001	Maize	nucleus	41.42	46.7
CDY40795	Canola	nucleus	48.54	46.59
EES14345	Sorghum	nucleus	41.84	45.25
TraesCS7B01G230000.1	Wheat	nucleus	39.33	43.72
TraesCS7A01G329300.1	Wheat	nucleus	39.33	43.52
TraesCS7D01G326200.1	Wheat	nucleus	39.33	43.52
VIT_04s0044g00110.t01	Wine grape	nucleus	26.78	41.56
VIT_18s0122g01190.t01	Wine grape	nucleus	25.52	39.87
VIT_08s0007g02200.t01	Wine grape	nucleus	24.27	34.52
Bra009681.1-P	Field mustard	nucleus	21.34	32.08
CDX80362	Canola	nucleus	20.92	30.86
VIT_13s0067g00640.t01	Wine grape	nucleus	23.85	30.0
HORVU7Hr1G078760.8	Barley	nucleus, plastid	34.31	28.28
CDX88025	Canola	nucleus	20.92	27.17

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:100247584	wikigene:100247584	MapMan:35.1	EMBL:AM459462	ProteinID:CAN61363
ProteinID:CAN61363.1	ProteinID:CCB58849	ProteinID:CCB58849.1	ncoils:Coil	UniProt:F6HVY6	EMBL:FN596260
GO:GO:0000741	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150	GO:GO:0009987
GO:GO:0010197	GO:GO:0016043	GO:GO:0030154	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071
InterPro:IPR036910	EntrezGene:LOC100247584	wikigene:LOC100247584	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711
PANTHER:PTHR13711:SF147	SMART:SM00398	SUPFAM:SSF47095	TIGR:TC60817	UniParc:UPI00019858EF	ArrayExpress:VIT_10s0071g00870
EnsemblPlantsGene:VIT_10s0071g00870	EnsemblPlants:VIT_10s0071g00870.t01	unigene:Vvi.15441	RefSeq:XP_002267697	RefSeq:XP_002267697.2	RefSeq:XP_002267697.3
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:-:17403375..17405769

Molecular Weight (calculated)

27057.5 Da

IEP (calculated)

9.637

GRAVY (calculated)

-0.855

Length

239 amino acids

Sequence
(BLAST)

001: MAGTDRRQIE NKSISEFPSN VVLLKIKAIS LSLHLLSRSL FHPLSRALKM AGPKQRKRVE AETSSLKRAR DGSAFIRCEE CKKDVPVVLI DMHSCSLEAK
101: IKLNLEAQVV EKVTDVKKKP AEKKNATTTE PKPKKSRRLR KVKDPNMPKR PPTAFFLFMD DFRKEYKESN PDSKNVSVVA KEGGEKWKSM TDEEKKPYVD
201: KAAELKAEYD KAMETYNAEN GEEEGGSGKE ADLELIDDE

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.