Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G326200.1 | Wheat | nucleus | 97.21 | 96.76 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 97.21 | 96.76 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 82.33 | 61.03 |
| Zm00001d052749_P001 | Maize | nucleus | 60.0 | 60.85 |
| Os08t0101100-01 | Rice | nucleus | 56.74 | 60.1 |
| EES14345 | Sorghum | nucleus | 61.4 | 59.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.05 | 49.75 |
| KRH36171 | Soybean | nucleus | 40.93 | 44.0 |
| Solyc04g008820.2.1 | Tomato | nucleus | 43.26 | 43.26 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 41.86 | 43.06 |
| KRH75844 | Soybean | cytosol | 21.86 | 41.23 |
| CDY16851 | Canola | nucleus | 44.65 | 40.0 |
| CDY64875 | Canola | nucleus | 44.19 | 39.58 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 43.72 | 39.33 |
| Bra026498.1-P | Field mustard | nucleus | 44.65 | 39.02 |
| CDY46957 | Canola | nucleus | 43.72 | 38.68 |
| Bra029371.1-P | Field mustard | nucleus | 43.72 | 38.68 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 42.79 | 38.17 |
| PGSC0003DMT400065103 | Potato | nucleus | 42.79 | 37.86 |
| CDY40795 | Canola | nucleus | 43.26 | 37.35 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 20.47 | 36.67 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 20.0 | 34.68 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 21.4 | 33.09 |
| Bra009681.1-P | Field mustard | nucleus | 20.47 | 27.67 |
| CDX80362 | Canola | nucleus | 20.47 | 27.16 |
| CDX88025 | Canola | nucleus | 20.93 | 24.46 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 19.53 | 17.5 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G230000.1 | EnsemblPlantsGene:TraesCS7B01G230000 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF147 | PFAM:PF00505 | PFscan:PS50118 | SEG:seg |
| SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7B:+:432187135..432188257
Molecular Weight (calculated)
23625.4 Da
IEP (calculated)
4.817
GRAVY (calculated)
-1.013
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAGNAPRS RKRVEATVLK RARDGSAFTR CEACNKDVAI VLIDLHSCSL DSKIRLSLES QVVEKSVEIQ EKKRKAPSAA AGGKGRKKSK ADGDGAKKPK
101: AKRPPTAFFL FMKDFRVEFK ASHPEEKGVA AVGKAAGEKW KSMTEEEKKP YNDQAKELKA QFANGEGSAE NNVGDEKADV DAEEVEDAEQ EVDKPEDAPE
201: EEEEEEEKNE LDDDI
101: AKRPPTAFFL FMKDFRVEFK ASHPEEKGVA AVGKAAGEKW KSMTEEEKKP YNDQAKELKA QFANGEGSAE NNVGDEKADV DAEEVEDAEQ EVDKPEDAPE
201: EEEEEEEKNE LDDDI
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
Arabidopsis Description
HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.