Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G253900.1 | Wheat | nucleus | 98.56 | 98.56 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 97.84 | 97.84 |
| Os02t0670400-01 | Rice | nucleus | 80.58 | 77.24 |
| OQU85655 | Sorghum | nucleus | 71.94 | 75.19 |
| Zm00001d017555_P001 | Maize | nucleus | 69.06 | 55.17 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 89.21 | 55.11 |
| Zm00001d051427_P002 | Maize | nucleus | 67.63 | 52.22 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 43.88 | 50.83 |
| CDX69149 | Canola | nucleus | 49.64 | 48.94 |
| CDX75512 | Canola | nucleus | 48.92 | 48.23 |
| Bra011624.1-P | Field mustard | nucleus | 48.92 | 48.23 |
| AT2G17560.1 | Thale cress | nucleus | 46.76 | 47.1 |
| KRH39434 | Soybean | nucleus | 47.48 | 46.48 |
| CDY26814 | Canola | nucleus | 43.17 | 46.15 |
| KRH07880 | Soybean | nucleus | 46.04 | 46.04 |
| CDY64458 | Canola | nucleus | 43.88 | 44.53 |
| CDY24349 | Canola | nucleus | 43.17 | 43.8 |
| CDY30359 | Canola | nucleus | 42.45 | 43.38 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 35.97 | 40.32 |
| Bra002073.1-P | Field mustard | nucleus | 42.45 | 37.58 |
| AT4G35570.1 | Thale cress | nucleus | 33.09 | 36.8 |
| CDY40620 | Canola | nucleus, plastid | 48.92 | 33.01 |
| CDX72548 | Canola | plastid | 48.92 | 33.01 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 46.04 | 30.19 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 42.45 | 24.58 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 33.09 | 21.4 |
| Zm00001d031233_P001 | Maize | vacuole | 30.94 | 19.2 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 25.9 | 15.0 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G271600.1 | EnsemblPlantsGene:TraesCS6B01G271600 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF308 | PFAM:PF00505 | PFscan:PS50118 |
| SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr6B:+:489833072..489834998
Molecular Weight (calculated)
15402.6 Da
IEP (calculated)
9.285
GRAVY (calculated)
-1.531
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGKADTSKK GEGRLKAAGG ASKRKKDAAA AGKPKRPPSA FFVFMSEFRQ QYNAENPNNK SVANVSKAAG EKWRAMSDKD KAPYVEKAEQ KKKDYEKTKA
101: TFDNKESATS KKAKTQNDEE VKSEVEDEGS DEENEDDDE
101: TFDNKESATS KKAKTQNDEE VKSEVEDEGS DEENEDDDE
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.