Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26814 | Canola | nucleus | 88.24 | 92.31 |
| CDY64458 | Canola | nucleus | 89.71 | 89.05 |
| CDY24349 | Canola | nucleus | 88.97 | 88.32 |
| AT2G17560.1 | Thale cress | nucleus | 76.47 | 75.36 |
| CDX69149 | Canola | nucleus | 69.12 | 66.67 |
| CDX75512 | Canola | nucleus | 68.38 | 65.96 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 96.32 | 54.58 |
| CDY01357 | Canola | nucleus, plastid | 50.74 | 48.94 |
| CDY65900 | Canola | nucleus, plastid | 50.74 | 47.92 |
| CDX96626 | Canola | nucleus, plastid | 50.74 | 47.59 |
| CDY33643 | Canola | nucleus, plastid | 50.0 | 46.9 |
| CDY29512 | Canola | nucleus, plastid | 47.06 | 46.72 |
| KRH39434 | Soybean | nucleus | 47.79 | 45.77 |
| KRH07880 | Soybean | nucleus | 46.32 | 45.32 |
| CDX72548 | Canola | plastid | 67.65 | 44.66 |
| CDY40620 | Canola | nucleus, plastid | 66.91 | 44.17 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 44.85 | 43.88 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 44.12 | 43.17 |
| OQU85655 | Sorghum | nucleus | 41.91 | 42.86 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 43.38 | 42.45 |
| Os02t0670400-01 | Rice | nucleus | 44.85 | 42.07 |
| CDY31871 | Canola | plastid | 47.79 | 39.88 |
| CDX90629 | Canola | nucleus | 50.0 | 39.53 |
| CDY29051 | Canola | nucleus | 50.74 | 39.43 |
| CDX78045 | Canola | nucleus | 47.79 | 36.93 |
| Os04t0564600-01 | Rice | nucleus | 35.29 | 36.36 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 33.82 | 35.94 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 31.62 | 35.54 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 31.62 | 35.54 |
| KXG26906 | Sorghum | nucleus | 30.88 | 35.29 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 30.88 | 35.0 |
| Zm00001d002659_P001 | Maize | nucleus | 31.62 | 34.96 |
| Zm00001d051427_P002 | Maize | nucleus | 38.97 | 29.44 |
| Zm00001d017555_P001 | Maize | nucleus | 36.76 | 28.74 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 44.12 | 26.67 |
| CDY46957 | Canola | nucleus | 43.38 | 24.28 |
| CDY16851 | Canola | nucleus | 41.91 | 23.75 |
| CDY64875 | Canola | nucleus | 41.18 | 23.33 |
| CDY40795 | Canola | nucleus | 42.65 | 23.29 |
| CDX80362 | Canola | nucleus | 25.0 | 20.99 |
| CDX88025 | Canola | nucleus | 24.26 | 17.93 |
| Zm00001d031233_P001 | Maize | vacuole | 25.0 | 15.18 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078GYX9 | EnsemblPlants:CDY30359 | ProteinID:CDY30359 | ProteinID:CDY30359.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00045043001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI0004EDE64C | SEG:seg | : | : | : |
Description
BnaA09g09180DBnaA09g09180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYX9]
Coordinates
chrLK032252:+:432889..434178
Molecular Weight (calculated)
15222.3 Da
IEP (calculated)
8.849
GRAVY (calculated)
-1.535
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGQTKSEA TSTDQRRKTR GRKKKTTTKD PNKPKRPPSA FFVFLDDFRR EFNEANPNNK SVAAVGKAAG AKWKSMSEEE KAPYASKAES RKSEYLKSMQ
101: QYNMNLASGT NRGEDDESKS EVDEAGGSNE EEEDED
101: QYNMNLASGT NRGEDDESKS EVDEAGGSNE EEEDED
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.