Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29051 | Canola | nucleus | 94.19 | 92.57 |
| AT3G51880.2 | Thale cress | nucleus | 87.79 | 81.62 |
| Bra012832.1-P | Field mustard | nucleus | 75.0 | 81.13 |
| CDX78045 | Canola | nucleus | 80.81 | 78.98 |
| KRH65770 | Soybean | nucleus | 64.53 | 66.87 |
| KRH75875 | Soybean | nucleus | 65.12 | 66.27 |
| VIT_08s0007g02200.t01 | Wine grape | nucleus | 61.05 | 62.5 |
| PGSC0003DMT400021917 | Potato | nucleus | 59.88 | 58.86 |
| CDY29512 | Canola | nucleus, plastid | 46.51 | 58.39 |
| CDY65900 | Canola | nucleus, plastid | 48.26 | 57.64 |
| CDX96626 | Canola | nucleus, plastid | 48.26 | 57.24 |
| CDY33643 | Canola | nucleus, plastid | 47.09 | 55.86 |
| CDY01357 | Canola | nucleus, plastid | 43.6 | 53.19 |
| CDY26814 | Canola | nucleus | 38.37 | 50.77 |
| CDY64458 | Canola | nucleus | 40.12 | 50.37 |
| CDY30359 | Canola | nucleus | 39.53 | 50.0 |
| CDY24349 | Canola | nucleus | 39.53 | 49.63 |
| CDX75512 | Canola | nucleus | 38.95 | 47.52 |
| CDX69149 | Canola | nucleus | 38.95 | 47.52 |
| CDY31871 | Canola | plastid | 43.02 | 45.4 |
| CDY40620 | Canola | nucleus, plastid | 39.53 | 33.01 |
| CDX72548 | Canola | plastid | 39.53 | 33.01 |
| CDX80362 | Canola | nucleus | 23.84 | 25.31 |
| CDY46957 | Canola | nucleus | 30.81 | 21.81 |
| CDX88025 | Canola | nucleus | 23.26 | 21.74 |
| CDY64875 | Canola | nucleus | 30.23 | 21.67 |
| CDY16851 | Canola | nucleus | 30.23 | 21.67 |
| CDY40795 | Canola | nucleus | 30.81 | 21.29 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EnsemblPlants:CDX90629 | ProteinID:CDX90629 | ProteinID:CDX90629.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00151273001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF292 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI0004EDE0C4 | SEG:seg | : | : | : |
Description
BnaA03g41520D
Coordinates
chrLK031863:+:1198613..1200052
Molecular Weight (calculated)
19321.0 Da
IEP (calculated)
4.772
GRAVY (calculated)
-1.640
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTAKGKDKA KNTKEALKPV DDRKVGKRKA PAEKGETRKE KKAKKDPNKP KRAPSAFFVF LEDFRITFKK DNPNVKAVSA VGKAAGQKWK SMSQDEKAPY
101: EEKAAKRKAE YEKLMDAYNK NLEEGSDESE KSRSEVNDEA SEEEAQPDKG KAGDDDDAEE DDDDADDDEE ED
101: EEKAAKRKAE YEKLMDAYNK NLEEGSDESE KSRSEVNDEA SEEEAQPDKG KAGDDDDAEE DDDDADDDEE ED
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.