Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24349 | Canola | nucleus | 97.08 | 97.08 |
| CDY30359 | Canola | nucleus | 89.05 | 89.71 |
| CDY26814 | Canola | nucleus | 80.29 | 84.62 |
| AT2G17560.1 | Thale cress | nucleus | 75.91 | 75.36 |
| CDX75512 | Canola | nucleus | 72.26 | 70.21 |
| CDX69149 | Canola | nucleus | 71.53 | 69.5 |
| CDY01357 | Canola | nucleus, plastid | 52.55 | 51.06 |
| KRH39434 | Soybean | nucleus | 52.55 | 50.7 |
| CDY65900 | Canola | nucleus, plastid | 53.28 | 50.69 |
| CDX96626 | Canola | nucleus, plastid | 52.55 | 49.66 |
| KRH07880 | Soybean | nucleus | 50.37 | 49.64 |
| CDY33643 | Canola | nucleus, plastid | 51.82 | 48.97 |
| CDX72548 | Canola | plastid | 72.99 | 48.54 |
| CDY29512 | Canola | nucleus, plastid | 48.18 | 48.18 |
| CDY40620 | Canola | nucleus, plastid | 71.53 | 47.57 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 45.99 | 45.32 |
| OQU85655 | Sorghum | nucleus | 43.8 | 45.11 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 45.26 | 44.6 |
| Os02t0670400-01 | Rice | nucleus | 46.72 | 44.14 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 44.53 | 43.88 |
| CDY31871 | Canola | plastid | 48.91 | 41.1 |
| CDX90629 | Canola | nucleus | 50.37 | 40.12 |
| CDY29051 | Canola | nucleus | 51.09 | 40.0 |
| CDX78045 | Canola | nucleus | 50.37 | 39.2 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 33.58 | 38.02 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 35.04 | 37.5 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 32.85 | 37.19 |
| KXG26906 | Sorghum | nucleus | 32.12 | 36.97 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 32.12 | 36.67 |
| Os04t0564600-01 | Rice | nucleus | 35.04 | 36.36 |
| Zm00001d002659_P001 | Maize | nucleus | 32.12 | 35.77 |
| Zm00001d051427_P002 | Maize | nucleus | 40.88 | 31.11 |
| Zm00001d017555_P001 | Maize | nucleus | 38.69 | 30.46 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 44.53 | 27.11 |
| CDY46957 | Canola | nucleus | 43.8 | 24.69 |
| CDY16851 | Canola | nucleus | 42.34 | 24.17 |
| CDY64875 | Canola | nucleus | 41.61 | 23.75 |
| CDY40795 | Canola | nucleus | 43.07 | 23.69 |
| CDX80362 | Canola | nucleus | 26.28 | 22.22 |
| CDX88025 | Canola | nucleus | 25.55 | 19.02 |
| Zm00001d031233_P001 | Maize | vacuole | 26.28 | 16.07 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078JAC2 | EnsemblPlants:CDY64458 | ProteinID:CDY64458 | ProteinID:CDY64458.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00041245001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI000151E3F3 | SEG:seg | : | : | : |
Description
BnaCnng43910DBnaCnng43910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JAC2]
Coordinates
chrLK034469:-:14007..15277
Molecular Weight (calculated)
15247.4 Da
IEP (calculated)
9.353
GRAVY (calculated)
-1.472
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGQSKAEA TSTDQRLKTR GRKKKTATKD PNKPKRPPSA FFVFLDNFRR EFKEANPNNK SVAAVGKAAG AKWKSMSEEE KAPYATKAET RKSEYNKSMQ
101: QYNMKLANGT SRGEDDESKS EVDEAGGASE EEEEDDD
101: QYNMKLANGT SRGEDDESKS EVDEAGGASE EEEEDDD
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.