Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002659_P001 | Maize | nucleus | 87.39 | 84.55 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 68.91 | 67.77 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 68.91 | 67.77 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 67.23 | 66.67 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 68.07 | 63.28 |
| Os04t0564600-01 | Rice | nucleus | 68.91 | 62.12 |
| OQU85655 | Sorghum | nucleus | 49.58 | 44.36 |
| CDY64458 | Canola | nucleus | 36.97 | 32.12 |
| CDY24349 | Canola | nucleus | 36.97 | 32.12 |
| KRH07880 | Soybean | nucleus | 36.97 | 31.65 |
| CDY26814 | Canola | nucleus | 34.45 | 31.54 |
| CDX75512 | Canola | nucleus | 36.97 | 31.21 |
| Bra011624.1-P | Field mustard | nucleus | 36.97 | 31.21 |
| KRH39434 | Soybean | nucleus | 36.97 | 30.99 |
| CDY30359 | Canola | nucleus | 35.29 | 30.88 |
| CDX69149 | Canola | nucleus | 36.13 | 30.5 |
| AT2G17560.1 | Thale cress | nucleus | 31.93 | 27.54 |
| Bra002073.1-P | Field mustard | nucleus | 36.13 | 27.39 |
| AT4G35570.1 | Thale cress | nucleus | 27.73 | 26.4 |
| OQU89887 | Sorghum | nucleus | 27.73 | 22.15 |
| CDX72548 | Canola | plastid | 37.82 | 21.84 |
| CDY40620 | Canola | nucleus, plastid | 37.82 | 21.84 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 36.97 | 20.75 |
| EES14345 | Sorghum | nucleus | 34.45 | 18.55 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 33.61 | 16.67 |
| OQU87294 | Sorghum | plastid | 22.69 | 14.29 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 32.77 | 14.03 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.2 | UniProt:A0A1B6PMM0 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | EnsemblPlants:KXG26906 | ProteinID:KXG26906 | ProteinID:KXG26906.1 |
| PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF308 | SMART:SM00398 | EnsemblPlantsGene:SORBI_3006G179800 |
| SUPFAM:SSF47095 | UniParc:UPI0001C8061B | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:53420444..53423151
Molecular Weight (calculated)
13179.2 Da
IEP (calculated)
8.903
GRAVY (calculated)
-1.418
Length
119 amino acids
Sequence
(BLAST)
(BLAST)
001: MKDTSFKASG AKRKKAGGAK RGITPFFAFL AEFRPQFLEK HPELKGVKEV SKAAGEKWRS MSDEEKAKYG STKKQGDKAS KKESTSSKKA KTDGREGEEA
101: VKSEVEDDDE QDGNEDENE
101: VKSEVEDDDE QDGNEDENE
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.