Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75512 | Canola | nucleus | 98.58 | 98.58 |
| CDY64458 | Canola | nucleus | 69.5 | 71.53 |
| CDY24349 | Canola | nucleus | 68.79 | 70.8 |
| CDY26814 | Canola | nucleus | 65.25 | 70.77 |
| CDY30359 | Canola | nucleus | 66.67 | 69.12 |
| AT4G35570.1 | Thale cress | nucleus | 60.28 | 68.0 |
| CDX72548 | Canola | plastid | 91.49 | 62.62 |
| CDY40620 | Canola | nucleus, plastid | 90.78 | 62.14 |
| KRH39434 | Soybean | nucleus | 55.32 | 54.93 |
| KRH07880 | Soybean | nucleus | 53.19 | 53.96 |
| CDY01357 | Canola | nucleus, plastid | 53.19 | 53.19 |
| CDX96626 | Canola | nucleus, plastid | 53.9 | 52.41 |
| CDY33643 | Canola | nucleus, plastid | 53.9 | 52.41 |
| CDY65900 | Canola | nucleus, plastid | 53.19 | 52.08 |
| CDY29512 | Canola | nucleus, plastid | 48.94 | 50.37 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 49.65 | 50.36 |
| Os02t0670400-01 | Rice | nucleus | 51.06 | 49.66 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 48.94 | 49.64 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 48.94 | 49.64 |
| OQU85655 | Sorghum | nucleus | 45.39 | 48.12 |
| CDY31871 | Canola | plastid | 50.35 | 43.56 |
| CDY29051 | Canola | nucleus | 49.65 | 40.0 |
| CDX78045 | Canola | nucleus | 49.65 | 39.77 |
| CDX90629 | Canola | nucleus | 47.52 | 38.95 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 33.33 | 36.72 |
| Zm00001d002659_P001 | Maize | nucleus | 31.91 | 36.59 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 31.21 | 36.36 |
| KXG26906 | Sorghum | nucleus | 30.5 | 36.13 |
| Os04t0564600-01 | Rice | nucleus | 33.33 | 35.61 |
| Zm00001d051427_P002 | Maize | nucleus | 45.39 | 35.56 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 30.5 | 35.54 |
| Zm00001d017555_P001 | Maize | nucleus | 42.55 | 34.48 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 29.08 | 34.17 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 49.65 | 31.11 |
| CDY64875 | Canola | nucleus | 39.01 | 22.92 |
| CDY40795 | Canola | nucleus | 39.72 | 22.49 |
| CDY46957 | Canola | nucleus | 38.3 | 22.22 |
| CDY16851 | Canola | nucleus | 36.88 | 21.67 |
| CDX80362 | Canola | nucleus | 24.11 | 20.99 |
| CDX88025 | Canola | nucleus | 23.4 | 17.93 |
| Zm00001d031233_P001 | Maize | vacuole | 24.82 | 15.62 |
Protein Annotations
| EnsemblPlants:CDX69149 | EnsemblPlantsGene:GSBRNA2T00130936001 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | PFAM:PF00505 | PFscan:PS50118 |
| ProteinID:CDX69149 | ProteinID:CDX69149.1 | SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0001E7A3D9 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC01g03040D
Coordinates
chrLK031789:-:3178747..3180081
Molecular Weight (calculated)
15363.7 Da
IEP (calculated)
9.296
GRAVY (calculated)
-1.342
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGETKAQS KSTDERLKTR GKKAGKKAAK DPNKPKRPPS AFFVFLEGFR KEFNLANPDN KSVGAVGKAA GAKWKSMTDE DKAPYVAKAE SKKTEYTKTM
101: QKYNMKLANG TSTAGDDDSD KSKSEVNDEA EGGSEEEEDD D
101: QKYNMKLANG TSTAGDDDSD KSKSEVNDEA EGGSEEEEDD D
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.