Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16851 | Canola | nucleus | 94.17 | 94.17 |
| Bra026498.1-P | Field mustard | nucleus | 96.25 | 93.9 |
| CDY46957 | Canola | nucleus | 85.0 | 83.95 |
| CDY40795 | Canola | nucleus | 84.58 | 81.53 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 78.75 | 78.42 |
| Solyc04g008820.2.1 | Tomato | nucleus | 52.92 | 59.07 |
| KRH75844 | Soybean | cytosol | 27.92 | 58.77 |
| KRH36171 | Soybean | nucleus | 47.92 | 57.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.67 | 56.28 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 48.33 | 55.5 |
| PGSC0003DMT400065103 | Potato | nucleus | 52.5 | 51.85 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 49.17 | 49.37 |
| Os08t0101100-01 | Rice | nucleus | 40.42 | 47.78 |
| Zm00001d052749_P001 | Maize | nucleus | 40.83 | 46.23 |
| EES14345 | Sorghum | nucleus | 40.83 | 44.34 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 39.58 | 44.19 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 39.58 | 43.98 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 39.58 | 43.98 |
| CDY24349 | Canola | nucleus | 23.75 | 41.61 |
| CDY64458 | Canola | nucleus | 23.75 | 41.61 |
| CDY33643 | Canola | nucleus, plastid | 25.0 | 41.38 |
| CDY30359 | Canola | nucleus | 23.33 | 41.18 |
| CDY65900 | Canola | nucleus, plastid | 24.58 | 40.97 |
| CDX80362 | Canola | nucleus | 27.5 | 40.74 |
| CDX96626 | Canola | nucleus, plastid | 24.58 | 40.69 |
| CDY01357 | Canola | nucleus, plastid | 23.75 | 40.43 |
| CDY26814 | Canola | nucleus | 21.67 | 40.0 |
| CDX69149 | Canola | nucleus | 22.92 | 39.01 |
| CDX75512 | Canola | nucleus | 22.92 | 39.01 |
| CDY29512 | Canola | nucleus, plastid | 22.08 | 38.69 |
| CDX88025 | Canola | nucleus | 27.5 | 35.87 |
| CDY31871 | Canola | plastid | 23.33 | 34.36 |
| CDX78045 | Canola | nucleus | 23.75 | 32.39 |
| CDY29051 | Canola | nucleus | 22.92 | 31.43 |
| CDX90629 | Canola | nucleus | 21.67 | 30.23 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 34.58 | 28.62 |
| CDY40620 | Canola | nucleus, plastid | 22.5 | 26.21 |
| CDX72548 | Canola | plastid | 22.5 | 26.21 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078JEL5 | EnsemblPlants:CDY64875 | ProteinID:CDY64875 | ProteinID:CDY64875.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00043774001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF147 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EBCF22 | SEG:seg | : | : |
Description
BnaCnng45460DBnaCnng45460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JEL5]
Coordinates
chrLK034585:+:10221..11923
Molecular Weight (calculated)
26783.7 Da
IEP (calculated)
4.873
GRAVY (calculated)
-1.302
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGGGGGSS KSNAAKQRKR VEAETKDEST AKNNSNTLLR AKDGSAFARC EGCNKNVAVA LISMHNCSLD AKIRVNLEAQ VVEMQAEAKK KPVERKKSTS
101: DEPKAKRVRK AKDEKNKKSS STSNKLKRPL TAFFIFMNDF RKTFKEENPS SNVKDVAKQG GEKWKSLTEE EKKVYLDKAA ELKAEYNKSL ESNDADEEEE
201: DEEKQSDDDA EEKQADDADE KQAEENEGKE EAEDEILDDY
101: DEPKAKRVRK AKDEKNKKSS STSNKLKRPL TAFFIFMNDF RKTFKEENPS SNVKDVAKQG GEKWKSLTEE EKKVYLDKAA ELKAEYNKSL ESNDADEEEE
201: DEEKQSDDDA EEKQADDADE KQAEENEGKE EAEDEILDDY
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
Arabidopsis Description
HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.