CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052749_P001	Maize	nucleus	86.88	90.57
Os08t0101100-01	Rice	nucleus	60.63	66.01
TraesCS7D01G326200.1	Wheat	nucleus	60.63	62.04
TraesCS7A01G329300.1	Wheat	nucleus	60.63	62.04
TraesCS7B01G230000.1	Wheat	nucleus	59.73	61.4
GSMUA_AchrUn_...	Banana	nucleus	45.7	50.75
Solyc04g008820.2.1	Tomato	nucleus	44.34	45.58
KRH36171	Soybean	nucleus	40.27	44.5
OQU85655	Sorghum	nucleus	26.24	43.61
KRG90584	Soybean	cytosol, nucleus, plastid	41.18	43.54
PGSC0003DMT400065103	Potato	nucleus	46.15	41.98
VIT_10s0071g00870.t01	Wine grape	nucleus	45.25	41.84
CDY64875	Canola	nucleus	44.34	40.83
CDY16851	Canola	nucleus	43.44	40.0
KRH75844	Soybean	cytosol	20.36	39.47
Bra026498.1-P	Field mustard	nucleus	43.89	39.43
HORVU7Hr1G078760.8	Barley	nucleus, plastid	51.13	38.97
CDY40795	Canola	nucleus	43.89	38.96
CDY46957	Canola	nucleus	42.08	38.27
Bra029371.1-P	Field mustard	nucleus	42.08	38.27
AT5G23420.1	Thale cress	nucleus, plastid	41.18	37.76
KXG26906	Sorghum	nucleus	18.55	34.45
CDX80362	Canola	nucleus	19.91	27.16
Bra009681.1-P	Field mustard	nucleus	19.46	27.04
OQU89887	Sorghum	nucleus	16.29	24.16
CDX88025	Canola	nucleus	19.91	23.91
OQU87294	Sorghum	plastid	17.65	20.63
KXG20955	Sorghum	cytosol, extracellular, nucleus	20.81	16.55

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EntrezGene:8067050	UniProt:C5YLC2	EnsemblPlants:EES14345	ProteinID:EES14345
ProteinID:EES14345.1	GO:GO:0000741	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007275	GO:GO:0008150
GO:GO:0009987	GO:GO:0010197	GO:GO:0016043	GO:GO:0030154	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf
InterPro:IPR009071	InterPro:IPR036910	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147
SMART:SM00398	EnsemblPlantsGene:SORBI_3007G000500	SUPFAM:SSF47095	unigene:Sbi.8108	UniParc:UPI0001A8787A	RefSeq:XP_002444850.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:74227..76009

Molecular Weight (calculated)

24357.3 Da

IEP (calculated)

6.182

GRAVY (calculated)

-1.146

Length

221 amino acids

Sequence
(BLAST)

001: MAGGKSGGNA ARSRKRVEAT VLKRSRDGSA FTRCEACNKD VPVVLIDMHS CSLDKHIRMM LEAQVVEKTV EVAAKPAERN KSSAKGHGGG GNKDAKRKRS
101: PTAFFLFMDD FRKEFKAAHP DNKSVATVAK EGGEKWKSMT DEEKKPYVEK AAELKAQAEN GEGSGENNVA KKKAKADDKD GEQEVDQPAK KRIRRKALDE
201: DEDDAGDQED EDEQNELDDD M

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.