Factsheet for Solyc04g008820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065103	Potato	nucleus	93.95	83.13
KRH75844	Soybean	cytosol	30.23	57.02
KRH36171	Soybean	nucleus	51.63	55.5
GSMUA_AchrUn_...	Banana	nucleus	50.7	54.77
KRG90584	Soybean	cytosol, nucleus, plastid	52.56	54.07
CDY16851	Canola	nucleus	59.07	52.92
CDY64875	Canola	nucleus	59.07	52.92
Bra026498.1-P	Field mustard	nucleus	60.0	52.44
AT5G23420.1	Thale cress	nucleus, plastid	58.14	51.87
VIT_10s0071g00870.t01	Wine grape	nucleus	57.21	51.46
CDY46957	Canola	nucleus	57.21	50.62
CDY40795	Canola	nucleus	58.6	50.6
Bra029371.1-P	Field mustard	nucleus	56.74	50.21
Os08t0101100-01	Rice	nucleus	43.72	46.31
Zm00001d052749_P001	Maize	nucleus	44.65	45.28
EES14345	Sorghum	nucleus	45.58	44.34
TraesCS7B01G230000.1	Wheat	nucleus	43.26	43.26
TraesCS7A01G329300.1	Wheat	nucleus	43.26	43.06
TraesCS7D01G326200.1	Wheat	nucleus	43.26	43.06
Solyc02g082700.2.1	Tomato	nucleus	23.72	36.43
Solyc03g032130.2.1	Tomato	nucleus	16.74	31.86
CDX80362	Canola	nucleus	23.26	30.86
Bra009681.1-P	Field mustard	nucleus	22.33	30.19
HORVU7Hr1G078760.8	Barley	nucleus, plastid	38.6	28.62
CDX88025	Canola	nucleus	22.79	26.63

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf
InterPro:IPR009071	InterPro:IPR036910	UniProt:K4BP38	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711
PANTHER:PTHR13711:SF147	SMART:SM00398	SUPFAM:SSF47095	EnsemblPlantsGene:Solyc04g008820.2	EnsemblPlants:Solyc04g008820.2.1	UniParc:UPI0002767324
SEG:seg	:	:	:	:	:

Description

High mobility group B protein 7 [Source:Projected from Arabidopsis thaliana (AT5G23420) UniProtKB/Swiss-Prot;Acc:Q8LDF9]

Coordinates

chr4:+:2435267..2437869

Molecular Weight (calculated)

23738.6 Da

IEP (calculated)

5.181

GRAVY (calculated)

-1.054

Length

215 amino acids

Sequence
(BLAST)

001: MAGGGASTKA SNGGPTRVRK RVEVESAASA ASLKRAKDGS AFARCEECSK DVPIALISFH NCSLDAKIKM NLEAQVVENQ TEVKKPAAKS KEKSTEPKAK
101: REKKPKNPNA PKRPPSAFFV FMNDFRQEFK AANPDCKSVS MVAKEGGEKW KSMTDEEKKP YQEKAAELKA AYEKSFKSNT DADNSNDDDE EPEKEVKEEI
201: AVDEEAKEEI EVDEE

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.