Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14345 | Sorghum | nucleus | 90.57 | 86.88 |
| Os08t0101100-01 | Rice | nucleus | 64.15 | 67.0 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 61.79 | 60.65 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 61.79 | 60.65 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 60.85 | 60.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 49.06 | 52.26 |
| KRH36171 | Soybean | nucleus | 42.92 | 45.5 |
| Solyc04g008820.2.1 | Tomato | nucleus | 45.28 | 44.65 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 43.87 | 44.5 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 46.7 | 41.42 |
| KRH75844 | Soybean | cytosol | 22.17 | 41.23 |
| PGSC0003DMT400065103 | Potato | nucleus | 47.17 | 41.15 |
| CDY64875 | Canola | nucleus | 46.23 | 40.83 |
| CDY16851 | Canola | nucleus | 45.75 | 40.42 |
| Bra026498.1-P | Field mustard | nucleus | 45.75 | 39.43 |
| CDY46957 | Canola | nucleus | 44.34 | 38.68 |
| Bra029371.1-P | Field mustard | nucleus | 44.34 | 38.68 |
| CDY40795 | Canola | nucleus | 45.28 | 38.55 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 52.36 | 38.28 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 43.4 | 38.17 |
| Zm00001d036355_P001 | Maize | nucleus | 14.62 | 34.44 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 25.47 | 34.39 |
| Zm00001d051427_P002 | Maize | nucleus | 27.83 | 32.78 |
| Zm00001d017555_P001 | Maize | nucleus | 26.89 | 32.76 |
| Zm00001d002659_P001 | Maize | nucleus | 18.87 | 32.52 |
| CDX80362 | Canola | nucleus | 21.7 | 28.4 |
| Bra009681.1-P | Field mustard | nucleus | 20.75 | 27.67 |
| Zm00001d021433_P002 | Maize | nucleus | 19.81 | 27.63 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 16.51 | 25.18 |
| CDX88025 | Canola | nucleus | 21.23 | 24.46 |
| Zm00001d006306_P006 | Maize | vacuole | 19.81 | 24.0 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 11.79 | 22.52 |
| Zm00001d006298_P001 | Maize | cytosol | 13.21 | 20.9 |
| Zm00001d031233_P001 | Maize | vacuole | 16.98 | 16.07 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | ProteinID:AQK57946.1 | UniProt:B6T1S6 | EMBL:BT066033 | EMBL:EU958941 |
| EMBL:EU967776 | GO:GO:0000741 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007275 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0010197 | GO:GO:0016043 | GO:GO:0030154 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | EMBL:KJ727790 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 |
| PANTHER:PTHR13711:SF147 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI000182D09D | EnsemblPlantsGene:Zm00001d052749 | EnsemblPlants:Zm00001d052749_P001 |
| EnsemblPlants:Zm00001d052749_T001 | SEG:seg | : | : | : | : |
Description
nucleosome/chromatin assembly factor D nucleosome/chromatin assembly factor D
Coordinates
chr4:+:199665081..199666577
Molecular Weight (calculated)
23534.3 Da
IEP (calculated)
5.327
GRAVY (calculated)
-1.129
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGKSTGNA ARSRKRVEAT VLKRSRDGSA FTRCEACNKD VPVVLIDMHS CSLDEKIRMT LEAQVVEKTV EVASADRKKS SAKGGGNKDA KRKRSPTAFF
101: LFMDDFRKEF KATHPDNKSV ATVAKEGGER WKSMTDEEKK PYIEKAAELK AEAENGEGSG ENNVATKKAK TDDQEVDQPA KKLRKCKALH EDEDDDGDQE
201: DEDEKNELDD DM
101: LFMDDFRKEF KATHPDNKSV ATVAKEGGER WKSMTDEEKK PYIEKAAELK AEAENGEGSG ENNVATKKAK TDDQEVDQPA KKLRKCKALH EDEDDDGDQE
201: DEDEKNELDD DM
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
Arabidopsis Description
HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.