Factsheet for Zm00001d031233_P001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036355_P001	Maize	nucleus	12.5	31.11
Os02t0670400-01	Rice	nucleus	20.09	31.03
TraesCS6A01G253900.1	Wheat	nucleus	19.2	30.94
TraesCS6B01G271600.1	Wheat	nucleus	19.2	30.94
TraesCS6D01G235400.1	Wheat	nucleus	19.2	30.94
KRH07880	Soybean	nucleus	18.75	30.22
KRH39434	Soybean	nucleus	17.86	28.17
CDY26814	Canola	nucleus	15.62	26.92
CDY24349	Canola	nucleus	16.07	26.28
CDY64458	Canola	nucleus	16.07	26.28
AT2G17560.1	Thale cress	nucleus	16.07	26.09
CDY30359	Canola	nucleus	15.18	25.0
CDX75512	Canola	nucleus	15.62	24.82
CDX69149	Canola	nucleus	15.62	24.82
Bra011624.1-P	Field mustard	nucleus	15.62	24.82
Zm00001d051427_P002	Maize	nucleus	19.64	24.44
Zm00001d014858_P001	Maize	extracellular, mitochondrion	16.96	24.2
Zm00001d017555_P001	Maize	nucleus	18.3	23.56
AT4G35570.1	Thale cress	nucleus	12.5	22.4
Bra002073.1-P	Field mustard	nucleus	15.62	22.29
Zm00001d002659_P001	Maize	nucleus	12.05	21.95
Zm00001d021433_P002	Maize	nucleus	14.73	21.71
Zm00001d006306_P006	Maize	vacuole	14.29	18.29
Zm00001d011528_P001	Maize	mitochondrion, plastid	8.93	18.02
HORVU6Hr1G064720.1	Barley	nucleus, plastid	17.86	17.78
CDY40620	Canola	nucleus, plastid	15.62	16.99
CDX72548	Canola	plastid	15.62	16.99
Bra017723.1-P	Field mustard	nucleus, plastid	16.07	16.98
Zm00001d052749_P001	Maize	nucleus	16.07	16.98
Zm00001d043946_P001	Maize	nucleus, plastid	9.82	15.83
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	15.18	14.17
Zm00001d006298_P001	Maize	cytosol	7.14	11.94

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	UniProt:A0A1D6KHG4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom
InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	ProteinID:ONM02460.1	PFAM:PF00505	PFscan:PS50118
PANTHER:PTHR13711	PANTHER:PTHR13711:SF308	SUPFAM:SSF47095	UniParc:UPI000843D116	EnsemblPlantsGene:Zm00001d031233	EnsemblPlants:Zm00001d031233_P001
EnsemblPlants:Zm00001d031233_T001	:	:	:	:	:

Description

HMG-transcription factor 101High mobility group B protein 4

Coordinates

chr1:-:182947174..182951362

Molecular Weight (calculated)

24963.3 Da

IEP (calculated)

8.401

GRAVY (calculated)

-0.053

Length

224 amino acids

Sequence
(BLAST)

001: MNHGAKVFMV QLQANATHVF VKPSDSGTLM LMPLSLYLTS ADFEVASPGH RSVVGFSAIA DAHAGRCKIF DDAASPNNEM LMTHDGRGYI YFLLLSQPGV
101: SSNHSCCYTL KWNFLLLSLQ SELCNIIELT YDHCGLWFAL EFMCCSCLMN LLQKNKGDNE RLWAAGIAGK RKKVIMSGKP KRPPSAFFVF MSEFRQEYQV
201: QHPGNKSIVV VSKTAGEKWH AKSD

Best Arabidopsis Sequence Match ( AT2G17560.3 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAEA EDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.