Factsheet for Bra002073.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24349	Canola	nucleus	86.62	99.27
AT2G17560.1	Thale cress	nucleus	64.33	73.19
Bra011624.1-P	Field mustard	nucleus	61.78	68.79
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	79.62	52.08
KRH39434	Soybean	nucleus	43.95	48.59
Bra025838.1-P	Field mustard	nucleus, plastid	42.04	48.18
KRH07880	Soybean	nucleus	42.04	47.48
Bra012244.1-P	Field mustard	nucleus, plastid	29.3	46.46
Bra017723.1-P	Field mustard	nucleus, plastid	60.51	44.81
TraesCS6D01G235400.1	Wheat	nucleus	38.85	43.88
OQU85655	Sorghum	nucleus	36.94	43.61
TraesCS6A01G253900.1	Wheat	nucleus	38.22	43.17
Os02t0670400-01	Rice	nucleus	39.49	42.76
TraesCS6B01G271600.1	Wheat	nucleus	37.58	42.45
HORVU2Hr1G095890.3	Barley	nucleus, plastid	30.57	37.5
TraesCS2D01G401100.1	Wheat	nucleus	28.03	36.36
KXG26906	Sorghum	nucleus	27.39	36.13
Os04t0564600-01	Rice	nucleus	29.94	35.61
TraesCS2A01G404100.1	Wheat	nucleus	27.39	35.54
TraesCS2B01G422000.1	Wheat	nucleus	26.75	35.0
Zm00001d002659_P001	Maize	nucleus	27.39	34.96
Bra012832.1-P	Field mustard	nucleus	34.39	33.96
Zm00001d051427_P002	Maize	nucleus	34.39	30.0
Zm00001d017555_P001	Maize	nucleus	32.48	29.31
HORVU6Hr1G064720.1	Barley	nucleus, plastid	38.22	26.67
Bra021911.1-P	Field mustard	nucleus	25.48	26.49
Bra029371.1-P	Field mustard	nucleus	37.58	24.28
Bra026498.1-P	Field mustard	nucleus	36.94	23.58
Bra009681.1-P	Field mustard	nucleus	22.29	22.01
Zm00001d031233_P001	Maize	vacuole	22.29	15.62

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EnsemblPlantsGene:Bra002073	EnsemblPlants:Bra002073.1	EnsemblPlants:Bra002073.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910
UniProt:M4CCZ2	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF222	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI0002543D23	SEG:seg	:	:	:

Description

AT2G17560 (E=1e-034) HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor

Coordinates

chrA10:+:11698071..11699354

Molecular Weight (calculated)

17639.1 Da

IEP (calculated)

4.836

GRAVY (calculated)

-1.443

Length

157 amino acids

Sequence
(BLAST)

001: MEREEDERGI FTLGEAKELE MKGGQSKAEA TSTDQRLKTR GRKKKTATKD PNKPKRPPSA FFVFLDDFRR EFKEANHNNK SVAAVGKAAG AKWKSMSEEE
101: KAPYATKAET RKSEYNQSMQ EYNMKLANGT SRGEDDESKS EVDEAGGASD EEEEDDD

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.