Factsheet for Zm00001d002659_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26906	Sorghum	nucleus	84.55	87.39
Os04t0564600-01	Rice	nucleus	70.73	65.91
TraesCS2A01G404100.1	Wheat	nucleus	64.23	65.29
TraesCS2D01G401100.1	Wheat	nucleus	64.23	65.29
HORVU2Hr1G095890.3	Barley	nucleus, plastid	67.48	64.84
TraesCS2B01G422000.1	Wheat	nucleus	62.6	64.17
KRH07880	Soybean	nucleus	37.4	33.09
KRH39434	Soybean	nucleus	37.4	32.39
CDY26814	Canola	nucleus	34.15	32.31
Zm00001d017555_P001	Maize	nucleus	45.53	32.18
CDY24349	Canola	nucleus	35.77	32.12
CDY64458	Canola	nucleus	35.77	32.12
CDX69149	Canola	nucleus	36.59	31.91
Zm00001d051427_P002	Maize	nucleus	46.34	31.67
CDY30359	Canola	nucleus	34.96	31.62
CDX75512	Canola	nucleus	35.77	31.21
Bra011624.1-P	Field mustard	nucleus	35.77	31.21
AT2G17560.1	Thale cress	nucleus	33.33	29.71
Bra002073.1-P	Field mustard	nucleus	34.96	27.39
AT4G35570.1	Thale cress	nucleus	27.64	27.2
Zm00001d014858_P001	Maize	extracellular, mitochondrion	34.15	26.75
Zm00001d021433_P002	Maize	nucleus	31.71	25.66
Zm00001d006298_P001	Maize	cytosol	26.83	24.63
Zm00001d006306_P006	Maize	vacuole	33.33	23.43
Zm00001d036355_P001	Maize	nucleus	17.07	23.33
CDY40620	Canola	nucleus, plastid	36.59	21.84
CDX72548	Canola	plastid	36.59	21.84
Zm00001d043946_P001	Maize	nucleus, plastid	23.58	20.86
Bra017723.1-P	Field mustard	nucleus, plastid	34.96	20.28
Zm00001d052749_P001	Maize	nucleus	32.52	18.87
Zm00001d011528_P001	Maize	mitochondrion, plastid	16.26	18.02
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	33.33	17.08
Zm00001d031233_P001	Maize	vacuole	21.95	12.05

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	EntrezGene:541987	UniProt:A0A060D8P6	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	EMBL:KJ728258	ProteinID:ONM14987.1
PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF308	SMART:SM00398	SUPFAM:SSF47095
UniParc:UPI0002210827	EnsemblPlantsGene:Zm00001d002659	EnsemblPlants:Zm00001d002659_P001	EnsemblPlants:Zm00001d002659_T001	SEG:seg	:

Description

nucleosome/chromatin assembly factor D nucleosome/chromatin assembly factor D

Coordinates

chr2:-:18564412..18572241

Molecular Weight (calculated)

13607.6 Da

IEP (calculated)

8.851

GRAVY (calculated)

-1.463

Length

123 amino acids

Sequence
(BLAST)

001: MKDTSFKATG AKRKKVGGAK RGLTPFFAFL AEFRPQYLEK HPELKGVKEV SKAAGEKWRS MSDEEKAKYG GSKKQDGKAS KKENTSSKKA KADVREGDEA
101: EGSNKSKSEV EDDEQDGNED EDE

Best Arabidopsis Sequence Match ( AT1G20693.2 )
(BLAST)

001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD

Arabidopsis Description

HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.