Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30359 | Canola | nucleus | 92.31 | 88.24 |
| CDY64458 | Canola | nucleus | 84.62 | 80.29 |
| CDY24349 | Canola | nucleus | 83.85 | 79.56 |
| AT2G17560.1 | Thale cress | nucleus | 73.85 | 69.57 |
| CDX69149 | Canola | nucleus | 70.77 | 65.25 |
| CDX75512 | Canola | nucleus | 69.23 | 63.83 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 90.0 | 48.75 |
| CDY29512 | Canola | nucleus, plastid | 50.77 | 48.18 |
| CDY01357 | Canola | nucleus, plastid | 50.77 | 46.81 |
| CDY65900 | Canola | nucleus, plastid | 51.54 | 46.53 |
| CDX96626 | Canola | nucleus, plastid | 51.54 | 46.21 |
| CDY33643 | Canola | nucleus, plastid | 50.77 | 45.52 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 47.69 | 44.6 |
| CDX72548 | Canola | plastid | 70.0 | 44.17 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 46.92 | 43.88 |
| CDY40620 | Canola | nucleus, plastid | 69.23 | 43.69 |
| KRH39434 | Soybean | nucleus | 47.69 | 43.66 |
| KRH07880 | Soybean | nucleus | 46.15 | 43.17 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 46.15 | 43.17 |
| Os02t0670400-01 | Rice | nucleus | 46.92 | 42.07 |
| OQU85655 | Sorghum | nucleus | 41.54 | 40.6 |
| CDY31871 | Canola | plastid | 50.77 | 40.49 |
| CDX90629 | Canola | nucleus | 50.77 | 38.37 |
| CDY29051 | Canola | nucleus | 50.0 | 37.14 |
| CDX78045 | Canola | nucleus | 49.23 | 36.36 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 34.62 | 35.16 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 32.31 | 34.71 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 32.31 | 34.71 |
| KXG26906 | Sorghum | nucleus | 31.54 | 34.45 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 31.54 | 34.17 |
| Zm00001d002659_P001 | Maize | nucleus | 32.31 | 34.15 |
| Os04t0564600-01 | Rice | nucleus | 33.85 | 33.33 |
| Zm00001d051427_P002 | Maize | nucleus | 41.54 | 30.0 |
| Zm00001d017555_P001 | Maize | nucleus | 37.69 | 28.16 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 46.92 | 27.11 |
| CDY46957 | Canola | nucleus | 40.77 | 21.81 |
| CDY64875 | Canola | nucleus | 40.0 | 21.67 |
| CDY16851 | Canola | nucleus | 40.0 | 21.67 |
| CDX80362 | Canola | nucleus | 26.92 | 21.6 |
| CDY40795 | Canola | nucleus | 40.77 | 21.29 |
| CDX88025 | Canola | nucleus | 26.15 | 18.48 |
| Zm00001d031233_P001 | Maize | vacuole | 26.92 | 15.62 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078GNJ1 | EnsemblPlants:CDY26814 | ProteinID:CDY26814 | ProteinID:CDY26814.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00035760001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI0004EE5C5B | SEG:seg | : | : | : |
Description
BnaC09g09410DBnaC09g09410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GNJ1]
Coordinates
chrLK032194:-:411041..412234
Molecular Weight (calculated)
14551.9 Da
IEP (calculated)
10.033
GRAVY (calculated)
-1.252
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGQTKSEA TSTDQRLKTR GMKKKTTKDP NKPKRPPSAF FVFLDDFRRE FNEANPNNKS VAAVGKAAGA KWKSMSEEEK APYASKAESR KSEYLKSMQQ
101: YNMNLASGTN RGEDDESKSE GSDEVLIQDF
101: YNMNLASGTN RGEDDESKSE GSDEVLIQDF
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.