Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29512 | Canola | nucleus, plastid | 90.28 | 94.89 |
| CDX96626 | Canola | nucleus, plastid | 90.28 | 89.66 |
| CDY33643 | Canola | nucleus, plastid | 88.89 | 88.28 |
| CDY01357 | Canola | nucleus, plastid | 84.03 | 85.82 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 81.25 | 81.25 |
| CDY31871 | Canola | plastid | 79.86 | 70.55 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 65.28 | 66.67 |
| Solyc02g082700.2.1 | Tomato | nucleus | 64.58 | 66.43 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 68.75 | 64.71 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 66.67 | 62.34 |
| Solyc03g032130.2.1 | Tomato | nucleus | 48.61 | 61.95 |
| KRH51597 | Soybean | nucleus | 67.36 | 61.78 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 60.42 | 59.18 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 62.5 | 58.44 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 50.0 | 58.06 |
| GSMUA_Achr10P... | Banana | nucleus | 61.81 | 57.79 |
| GSMUA_Achr11P... | Banana | nucleus | 59.72 | 56.58 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 60.42 | 56.49 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 48.61 | 56.45 |
| KRH60915 | Soybean | nucleus | 70.83 | 56.35 |
| Os06t0728000-02 | Rice | nucleus | 61.11 | 56.05 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 61.11 | 56.05 |
| CDX75512 | Canola | nucleus | 53.47 | 54.61 |
| TraesCSU01G099700.3 | Wheat | nucleus | 60.42 | 54.04 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 60.42 | 54.04 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 60.42 | 54.04 |
| CDY24349 | Canola | nucleus | 51.39 | 54.01 |
| CDY64458 | Canola | nucleus | 50.69 | 53.28 |
| CDX69149 | Canola | nucleus | 52.08 | 53.19 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.08 | 53.19 |
| Os09t0551600-01 | Rice | nucleus | 46.53 | 52.76 |
| CDY26814 | Canola | nucleus | 46.53 | 51.54 |
| CDY30359 | Canola | nucleus | 47.92 | 50.74 |
| PGSC0003DMT400048091 | Potato | nucleus | 54.17 | 48.75 |
| CDX78045 | Canola | nucleus | 59.03 | 48.3 |
| CDX90629 | Canola | nucleus | 57.64 | 48.26 |
| CDY29051 | Canola | nucleus | 58.33 | 48.0 |
| Zm00001d021433_P002 | Maize | nucleus | 49.31 | 46.71 |
| Zm00001d036355_P001 | Maize | nucleus | 27.78 | 44.44 |
| OQU89887 | Sorghum | nucleus | 43.75 | 42.28 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 50.0 | 41.62 |
| Zm00001d006306_P006 | Maize | vacuole | 48.61 | 40.0 |
| Zm00001d006298_P001 | Maize | cytosol | 36.81 | 39.55 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 57.64 | 37.22 |
| CDX72548 | Canola | plastid | 52.78 | 36.89 |
| CDY40620 | Canola | nucleus, plastid | 52.78 | 36.89 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 49.31 | 29.34 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 54.86 | 28.42 |
| PGSC0003DMT400043013 | Potato | nucleus | 41.67 | 25.75 |
| CDX80362 | Canola | nucleus | 27.78 | 24.69 |
| CDY64875 | Canola | nucleus | 40.97 | 24.58 |
| CDY46957 | Canola | nucleus | 40.97 | 24.28 |
| CDY16851 | Canola | nucleus | 39.58 | 23.75 |
| CDY40795 | Canola | nucleus | 40.97 | 23.69 |
| CDX88025 | Canola | nucleus | 27.08 | 21.2 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A078JHC6 | EnsemblPlants:CDY65900 | ProteinID:CDY65900 | ProteinID:CDY65900.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00050976001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 |
| SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0001D8421C | SEG:seg | : | : |
Description
BnaCnng49050DBnaCnng49050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHC6]
Coordinates
chrLK034993:-:20199..21887
Molecular Weight (calculated)
15877.1 Da
IEP (calculated)
5.899
GRAVY (calculated)
-1.418
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGKSKADT KSSKLAVNKK PAKASKAAAA AKDPNKPKRP SSAFFVFMED FRQTYKKDHP NNKSVAAVGK AGGHKWKSLS DTEKAPYVAK ADTRKVDYEK
101: NMKAYNKKLE EGPKEDEEES DKSVSEVNDE DDADDGSDEE EDDD
101: NMKAYNKKLE EGPKEDEEES DKSVSEVNDE DDADDGSDEE EDDD
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEEE EDDD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEEE EDDD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.