Factsheet for Solyc02g082700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003983	Potato	extracellular, nucleus	99.29	98.58
Bra025838.1-P	Field mustard	nucleus, plastid	63.57	64.96
CDY29512	Canola	nucleus, plastid	63.57	64.96
CDX96626	Canola	nucleus, plastid	67.14	64.83
CDY65900	Canola	nucleus, plastid	66.43	64.58
CDY33643	Canola	nucleus, plastid	66.43	64.14
AT1G20693.1	Thale cress	nucleus, plastid	65.71	63.89
CDY01357	Canola	nucleus, plastid	64.29	63.83
TraesCS5D01G359600.1	Wheat	nucleus	56.43	63.71
GSMUA_Achr2P03630_001	Banana	nucleus	70.0	63.64
GSMUA_Achr10P...	Banana	nucleus	68.57	62.34
TraesCS5B01G354800.1	Wheat	nucleus	55.0	62.1
VIT_18s0122g01190.t01	Wine grape	nucleus	67.86	62.09
Solyc03g032130.2.1	Tomato	nucleus	50.0	61.95
VIT_04s0044g00110.t01	Wine grape	nucleus	67.86	61.69
GSMUA_AchrUn_...	Banana	nucleus	60.71	60.28
Os09t0551600-01	Rice	nucleus	54.29	59.84
GSMUA_Achr9P21200_001	Banana	nucleus	65.71	59.74
GSMUA_Achr11P...	Banana	nucleus	64.29	59.21
Bra012244.1-P	Field mustard	nucleus, plastid	40.71	57.58
AT1G20696.2	Thale cress	nucleus, plastid	60.0	57.14
Os06t0728000-02	Rice	nucleus	61.43	54.78
Zm00001d014858_P001	Maize	extracellular, mitochondrion	61.43	54.78
KRH51597	Soybean	nucleus	61.43	54.78
Zm00001d021433_P002	Maize	nucleus	58.57	53.95
CDY31871	Canola	plastid	62.14	53.37
TraesCSU01G099700.3	Wheat	nucleus	60.0	52.17
TraesCS7D01G538400.2	Wheat	nucleus	60.0	52.17
TraesCS7A01G552400.1	Wheat	nucleus	59.29	51.55
KRH60915	Soybean	nucleus	63.57	49.17
Zm00001d036355_P001	Maize	nucleus	30.71	47.78
OQU89887	Sorghum	nucleus	50.71	47.65
Zm00001d006306_P006	Maize	vacuole	56.43	45.14
TraesCS5A01G352100.2	Wheat	nucleus	55.71	45.09
Zm00001d006298_P001	Maize	cytosol	42.14	44.03
HORVU7Hr1G121390.1	Barley	nucleus, plastid	58.57	36.77
HORVU5Hr1G087340.1	Barley	mitochondrion	53.57	30.99
KXG20955	Sorghum	cytosol, extracellular, nucleus	53.57	26.98
Solyc04g008820.2.1	Tomato	nucleus	36.43	23.72

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom
InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	UniProt:K4BAE0	PFAM:PF00505	PFscan:PS50118
PANTHER:PTHR13711	PANTHER:PTHR13711:SF222	SMART:SM00398	SUPFAM:SSF47095	EnsemblPlantsGene:Solyc02g082700.2	EnsemblPlants:Solyc02g082700.2.1
UniParc:UPI00027680F7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:-:46354979..46356520

Molecular Weight (calculated)

15659.9 Da

IEP (calculated)

8.749

GRAVY (calculated)

-1.573

Length

140 amino acids

Sequence
(BLAST)

001: MKGAKSKAKA DTKLGVRKKA TESKKAKNAA KDPNKPKRPP SAFFVFMEEF RKTYKEKHPN NKSVAVVGKA GGDKWKQLSD EEKAPYQAKA EKRKAEYQKS
101: MDAYNKKLAA GDADDESDKS KSEVHDDDED DDGSEEEDDD

Best Arabidopsis Sequence Match ( AT1G20696.1 )
(BLAST)

001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D

Arabidopsis Description

HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.