Factsheet for Bra012244.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01357	Canola	nucleus, plastid	100.0	70.21
Bra025838.1-P	Field mustard	nucleus, plastid	77.78	56.2
AT1G20693.1	Thale cress	nucleus, plastid	76.77	52.78
Solyc02g082700.2.1	Tomato	nucleus	57.58	40.71
VIT_18s0122g01190.t01	Wine grape	nucleus	62.63	40.52
PGSC0003DMT400003983	Potato	extracellular, nucleus	57.58	40.43
VIT_04s0044g00110.t01	Wine grape	nucleus	61.62	39.61
KRH51597	Soybean	nucleus	59.6	37.58
GSMUA_Achr2P03630_001	Banana	nucleus	55.56	35.71
KRH60915	Soybean	nucleus	64.65	35.36
Os06t0728000-02	Rice	nucleus	55.56	35.03
GSMUA_Achr11P...	Banana	nucleus	53.54	34.87
GSMUA_AchrUn_...	Banana	nucleus	49.49	34.75
Os09t0551600-01	Rice	nucleus	44.44	34.65
GSMUA_Achr9P21200_001	Banana	nucleus	53.54	34.42
Zm00001d014858_P001	Maize	extracellular, mitochondrion	54.55	34.39
Bra011624.1-P	Field mustard	nucleus	48.48	34.04
TraesCS5B01G354800.1	Wheat	nucleus	42.42	33.87
GSMUA_Achr10P...	Banana	nucleus	52.53	33.77
AT1G20696.2	Thale cress	nucleus, plastid	49.49	33.33
TraesCS5D01G359600.1	Wheat	nucleus	41.41	33.06
TraesCS7A01G552400.1	Wheat	nucleus	52.53	32.3
TraesCS7D01G538400.2	Wheat	nucleus	52.53	32.3
TraesCSU01G099700.3	Wheat	nucleus	52.53	32.3
Solyc03g032130.2.1	Tomato	nucleus	36.36	31.86
Zm00001d036355_P001	Maize	nucleus	28.28	31.11
PGSC0003DMT400048091	Potato	nucleus	47.47	29.38
Bra002073.1-P	Field mustard	nucleus	46.46	29.3
Bra012832.1-P	Field mustard	nucleus	43.43	27.04
Zm00001d021433_P002	Maize	nucleus	41.41	26.97
TraesCS5A01G352100.2	Wheat	nucleus	44.44	25.43
HORVU7Hr1G121390.1	Barley	nucleus, plastid	50.51	22.42
Zm00001d006306_P006	Maize	vacuole	38.38	21.71
OQU89887	Sorghum	nucleus	32.32	21.48
Bra017723.1-P	Field mustard	nucleus, plastid	42.42	19.81
Bra021911.1-P	Field mustard	nucleus	28.28	18.54
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	43.43	17.92
HORVU5Hr1G087340.1	Barley	mitochondrion	43.43	17.77
KXG20955	Sorghum	cytosol, extracellular, nucleus	47.47	16.91
Bra029371.1-P	Field mustard	nucleus	39.39	16.05
Bra026498.1-P	Field mustard	nucleus	38.38	15.45
Zm00001d006298_P001	Maize	cytosol	20.2	14.93
PGSC0003DMT400043013	Potato	nucleus	31.31	13.3
Bra009681.1-P	Field mustard	nucleus	20.2	12.58

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	EnsemblPlantsGene:Bra012244	EnsemblPlants:Bra012244.1	EnsemblPlants:Bra012244.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	UniProt:M4D6Y4
PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF222	SUPFAM:SSF47095	UniParc:UPI000254158D
SEG:seg	:	:	:	:	:

Description

AT1G20696 (E=8e-018) HMGB3, NFD3, NFD03 | HMGB3 (HIGH MOBILITY GROUP B 3); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor

Coordinates

chrA07:-:9107932..9109145

Molecular Weight (calculated)

10957.1 Da

IEP (calculated)

4.394

GRAVY (calculated)

-1.606

Length

99 amino acids

Sequence
(BLAST)

1: MKGGNSKSDS RNSKLSVNKK PTKASKAAAK DPNKPKRPAS AFFVFMEDFR QTYKKEHPDN KSVAAEEGPK EDEESDDKSV SEVSEEEDAD DGSDEEEDD

Best Arabidopsis Sequence Match ( AT1G20693.2 )
(BLAST)

001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD

Arabidopsis Description

HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.