Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 79.08 | 78.57 |
| CDX96626 | Canola | nucleus, plastid | 66.67 | 70.34 |
| CDY33643 | Canola | nucleus, plastid | 66.67 | 70.34 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 65.36 | 69.44 |
| CDY01357 | Canola | nucleus, plastid | 63.4 | 68.79 |
| CDY65900 | Canola | nucleus, plastid | 64.71 | 68.75 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 61.44 | 68.61 |
| CDY29512 | Canola | nucleus, plastid | 61.44 | 68.61 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 68.63 | 68.18 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 62.75 | 68.09 |
| Solyc02g082700.2.1 | Tomato | nucleus | 62.09 | 67.86 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 67.97 | 67.53 |
| GSMUA_Achr10P... | Banana | nucleus | 67.32 | 66.88 |
| KRH51597 | Soybean | nucleus | 67.32 | 65.61 |
| GSMUA_Achr11P... | Banana | nucleus | 64.71 | 65.13 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 52.29 | 64.52 |
| Os09t0551600-01 | Rice | nucleus | 52.94 | 63.78 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 51.63 | 63.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.17 | 63.12 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 40.52 | 62.63 |
| KRH60915 | Soybean | nucleus | 70.59 | 59.67 |
| Solyc03g032130.2.1 | Tomato | nucleus | 43.79 | 59.29 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 60.13 | 58.6 |
| Os06t0728000-02 | Rice | nucleus | 58.82 | 57.32 |
| CDY31871 | Canola | plastid | 60.78 | 57.06 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 52.94 | 55.1 |
| Zm00001d021433_P002 | Maize | nucleus | 53.59 | 53.95 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 55.56 | 52.8 |
| VIT_08s0007g02200.t01 | Wine grape | nucleus | 57.52 | 52.38 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 54.9 | 52.17 |
| TraesCSU01G099700.3 | Wheat | nucleus | 54.9 | 52.17 |
| PGSC0003DMT400048091 | Potato | nucleus | 54.25 | 51.88 |
| OQU89887 | Sorghum | nucleus | 48.37 | 49.66 |
| Zm00001d036355_P001 | Maize | nucleus | 28.1 | 47.78 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 52.94 | 46.82 |
| Zm00001d006306_P006 | Maize | vacuole | 52.94 | 46.29 |
| Zm00001d006298_P001 | Maize | cytosol | 39.22 | 44.78 |
| VIT_13s0067g00640.t01 | Wine grape | nucleus | 55.56 | 44.74 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 52.94 | 36.32 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 51.63 | 32.64 |
| PGSC0003DMT400043013 | Potato | nucleus | 45.75 | 30.04 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 50.98 | 28.06 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 39.87 | 25.52 |
Protein Annotations
| Gene3D:1.10.30.10 | EntrezGene:100246082 | wikigene:100246082 | MapMan:35.1 | ProteinID:CBI40727 | ProteinID:CBI40727.3 |
| ncoils:Coil | UniProt:D7UDB2 | EMBL:FN596759 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | EntrezGene:LOC100246082 | wikigene:LOC100246082 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 | SUPFAM:SSF47095 | TIGR:TC51959 |
| TIGR:TC59794 | UniParc:UPI0001985161 | ArrayExpress:VIT_18s0122g01190 | EnsemblPlantsGene:VIT_18s0122g01190 | EnsemblPlants:VIT_18s0122g01190.t01 | RefSeq:XP_002272299 |
| RefSeq:XP_002272299.1 | RefSeq:XP_003634333 | RefSeq:XP_003634333.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr18:-:807721..809475
Molecular Weight (calculated)
17168.9 Da
IEP (calculated)
9.446
GRAVY (calculated)
-1.502
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGRSKSDT KKADAKLSVK KGAAATKAGK KTKKEKPVKD PNKPKRPASA FFVFMEEFRK QYKEKHPSNK SVSVVGKAGG DKWKSMSEAE KAPYVAKAEK
101: RKVEYEKNMK AYNKKQAEGT KVVEEEDESE KSLSEVNDQE DDEDGSEEEE DDE
101: RKVEYEKNMK AYNKKQAEGT KVVEEEDESE KSLSEVNDQE DDEDGSEEEE DDE
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.