Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 78.57 | 79.08 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 72.08 | 72.08 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 70.13 | 70.13 |
| GSMUA_Achr10P... | Banana | nucleus | 68.83 | 68.83 |
| CDX96626 | Canola | nucleus, plastid | 64.29 | 68.28 |
| Solyc02g082700.2.1 | Tomato | nucleus | 61.69 | 67.86 |
| GSMUA_Achr11P... | Banana | nucleus | 66.88 | 67.76 |
| CDY33643 | Canola | nucleus, plastid | 63.64 | 67.59 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 53.9 | 66.94 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 61.04 | 66.67 |
| CDY65900 | Canola | nucleus, plastid | 62.34 | 66.67 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.04 | 66.67 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 59.09 | 66.42 |
| CDY29512 | Canola | nucleus, plastid | 59.09 | 66.42 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 53.25 | 66.13 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 61.69 | 65.97 |
| CDY01357 | Canola | nucleus, plastid | 60.39 | 65.96 |
| KRH51597 | Soybean | nucleus | 66.88 | 65.61 |
| Os09t0551600-01 | Rice | nucleus | 51.3 | 62.2 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 62.99 | 61.78 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 39.61 | 61.62 |
| Os06t0728000-02 | Rice | nucleus | 61.69 | 60.51 |
| KRH60915 | Soybean | nucleus | 69.48 | 59.12 |
| Solyc03g032130.2.1 | Tomato | nucleus | 42.86 | 58.41 |
| TraesCSU01G099700.3 | Wheat | nucleus | 59.74 | 57.14 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 59.74 | 57.14 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 59.74 | 57.14 |
| Zm00001d021433_P002 | Maize | nucleus | 55.19 | 55.92 |
| CDY31871 | Canola | plastid | 57.79 | 54.6 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 51.95 | 54.42 |
| PGSC0003DMT400048091 | Potato | nucleus | 54.55 | 52.5 |
| Zm00001d036355_P001 | Maize | nucleus | 30.52 | 52.22 |
| VIT_08s0007g02200.t01 | Wine grape | nucleus | 56.49 | 51.79 |
| OQU89887 | Sorghum | nucleus | 50.0 | 51.68 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 54.55 | 48.55 |
| Zm00001d006306_P006 | Maize | vacuole | 53.25 | 46.86 |
| Zm00001d006298_P001 | Maize | cytosol | 40.26 | 46.27 |
| VIT_13s0067g00640.t01 | Wine grape | nucleus | 56.49 | 45.79 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 57.14 | 39.46 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 53.25 | 33.88 |
| PGSC0003DMT400043013 | Potato | nucleus | 48.05 | 31.76 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 54.55 | 30.22 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 41.56 | 26.78 |
Protein Annotations
| Gene3D:1.10.30.10 | EntrezGene:100257544 | wikigene:100257544 | MapMan:35.1 | ProteinID:CBI37645 | ProteinID:CBI37645.3 |
| ncoils:Coil | UniProt:D7U469 | EMBL:FN596506 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | EntrezGene:LOC100257544 | wikigene:LOC100257544 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 | SUPFAM:SSF47095 | TIGR:TC67312 |
| TIGR:TC68407 | UniParc:UPI0001983247 | ArrayExpress:VIT_04s0044g00110 | EnsemblPlantsGene:VIT_04s0044g00110 | EnsemblPlants:VIT_04s0044g00110.t01 | RefSeq:XP_002280084 |
| RefSeq:XP_002280084.2 | RefSeq:XP_003631923 | RefSeq:XP_003631923.1 | RefSeq:XP_010649447.1 | RefSeq:XP_019074997.1 | SEG:seg |
Description
No Description!
Coordinates
chr4:+:20801686..20803128
Molecular Weight (calculated)
17137.8 Da
IEP (calculated)
9.206
GRAVY (calculated)
-1.416
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGKSKAAE VKRADSKLSV KKKGAAAVGK KTAKKEKAVK DPNKPKRPAS AFFVFMEEFR KQYKEKHPAN KSVSVVGKAG GDKWKSLSEA EKAPYVAKAE
101: KRKTEYNKSM QAYNKRMAEG PTAAEEEESD KSRSEVNDDE EDEDESGEEE DDEE
101: KRKTEYNKSM QAYNKRMAEG PTAAEEEESD KSRSEVNDDE EDEDESGEEE DDEE
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.