Factsheet for VIT_13s0067g00640.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g02200.t01	Wine grape	nucleus	68.42	77.38
VIT_04s0044g00110.t01	Wine grape	nucleus	45.79	56.49
VIT_18s0122g01190.t01	Wine grape	nucleus	44.74	55.56
VIT_10s0071g00870.t01	Wine grape	nucleus	30.0	23.85

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:100246802	wikigene:100246802	MapMan:35.1	EMBL:AM465371	ProteinID:CAN83423
ProteinID:CAN83423.1	ProteinID:CCB49873	ProteinID:CCB49873.1	ncoils:Coil	UniProt:F6HCD8	EMBL:FN595514
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910
EntrezGene:LOC100246802	wikigene:LOC100246802	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF292
SMART:SM00398	SUPFAM:SSF47095	TIGR:TC66332	UniParc:UPI0002108459	ArrayExpress:VIT_13s0067g00640	EnsemblPlantsGene:VIT_13s0067g00640
EnsemblPlants:VIT_13s0067g00640.t01	unigene:Vvi.24274	RefSeq:XP_002269398	RefSeq:XP_002269398.1	RefSeq:XP_002270185	RefSeq:XP_002270185.1
RefSeq:XP_003633441	RefSeq:XP_003633441.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr13:+:339995..342758

Molecular Weight (calculated)

21733.4 Da

IEP (calculated)

8.711

GRAVY (calculated)

-1.351

Length

190 amino acids

Sequence
(BLAST)

001: MINHGAEEKK RIFFFLGERI FPSTMKVTKG KAAARKDKKE ALKPVEDRRL GKRKAALKAD KSTKKLAKKE KLAKKDPNKP KRPPSAFFVF LEEFRKVYKQ
101: EHPNVKAVSA VGKAGGEKWK SLSEADKAPY EAKAAKRKSD YEKLMAAYNK KQESMADDDE EESDRSKSEV NDEDEETGEE EEEDEDEDED

Best Arabidopsis Sequence Match ( AT3G51880.2 )
(BLAST)

001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED

Arabidopsis Description

HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.