Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26579155
|
msms PMID:
26579155
doi
Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G552400.1 | Wheat | nucleus | 99.38 | 99.38 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 98.76 | 98.76 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 88.2 | 90.45 |
| Os06t0728000-02 | Rice | nucleus | 86.34 | 88.53 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 94.41 | 68.16 |
| Zm00001d036355_P001 | Maize | nucleus | 37.89 | 67.78 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 57.14 | 63.89 |
| CDY33643 | Canola | nucleus, plastid | 55.28 | 61.38 |
| CDX96626 | Canola | nucleus, plastid | 54.66 | 60.69 |
| CDY29512 | Canola | nucleus, plastid | 51.55 | 60.58 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 51.55 | 60.58 |
| CDY65900 | Canola | nucleus, plastid | 54.04 | 60.42 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 52.8 | 60.28 |
| Solyc02g082700.2.1 | Tomato | nucleus | 52.17 | 60.0 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 57.14 | 59.74 |
| CDY01357 | Canola | nucleus, plastid | 50.93 | 58.16 |
| KRH51597 | Soybean | nucleus | 54.04 | 55.41 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 52.17 | 54.9 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 32.3 | 52.53 |
| Solyc03g032130.2.1 | Tomato | nucleus | 36.02 | 51.33 |
| KRH60915 | Soybean | nucleus | 55.9 | 49.72 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 45.34 | 49.66 |
| CDY31871 | Canola | plastid | 47.83 | 47.24 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 77.64 | 44.96 |
| PGSC0003DMT400048091 | Potato | nucleus | 42.24 | 42.5 |
| PGSC0003DMT400043013 | Potato | nucleus | 36.02 | 24.89 |
Protein Annotations
| EnsemblPlants:TraesCSU01G099700.3 | EnsemblPlantsGene:TraesCSU01G099700 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | PFAM:PF00505 | PFscan:PS50118 | SEG:seg |
| SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrUn:+:88195052..88196458
Molecular Weight (calculated)
17244.8 Da
IEP (calculated)
7.037
GRAVY (calculated)
-1.269
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGAKSKGAA KADTKLAVKS KGAEKPAAKG KKGKAGKDPN KPKRAPSAFF VFMGEFREEF KQKNPKNKSV AAVGKAAGER WKSLSESEKA PYVAKANKLK
101: GEYNKAIAAY NKGESAAAAA PKKAAAKEVE EEDEEESDKS KSEINDDDDD EGSDEDEDDD E
101: GEYNKAIAAY NKGESAAAAA PKKAAAKEVE EEDEEESDKS KSEINDDDDD EGSDEDEDDD E
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.