Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
19621931
nucleus: 23777608 plastid: 27992503 extracellular: 28232208 |
msms PMID:
23777608
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 95.54 | 95.54 |
TraesCS7A01G552400.1 | Wheat | nucleus | 89.17 | 86.96 |
TraesCS7D01G538400.2 | Wheat | nucleus | 88.53 | 86.34 |
TraesCSU01G099700.3 | Wheat | nucleus | 88.53 | 86.34 |
Zm00001d036355_P001 | Maize | nucleus | 40.13 | 70.0 |
AT1G20693.1 | Thale cress | nucleus, plastid | 59.87 | 65.28 |
PGSC0003DMT400003983 | Potato | extracellular, nucleus | 55.41 | 61.7 |
VIT_04s0044g00110.t01 | Wine grape | nucleus | 60.51 | 61.69 |
Solyc02g082700.2.1 | Tomato | nucleus | 54.78 | 61.43 |
CDX96626 | Canola | nucleus, plastid | 56.69 | 61.38 |
CDY29512 | Canola | nucleus, plastid | 53.5 | 61.31 |
Bra025838.1-P | Field mustard | nucleus, plastid | 53.5 | 61.31 |
CDY65900 | Canola | nucleus, plastid | 56.05 | 61.11 |
CDY33643 | Canola | nucleus, plastid | 56.05 | 60.69 |
Os09t0551600-01 | Rice | nucleus | 49.04 | 60.63 |
HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 84.71 | 59.64 |
VIT_18s0122g01190.t01 | Wine grape | nucleus | 57.32 | 58.82 |
CDY01357 | Canola | nucleus, plastid | 51.59 | 57.45 |
KRH51597 | Soybean | nucleus | 57.32 | 57.32 |
Solyc03g032130.2.1 | Tomato | nucleus | 40.76 | 56.64 |
Bra012244.1-P | Field mustard | nucleus, plastid | 35.03 | 55.56 |
KRH60915 | Soybean | nucleus | 59.87 | 51.93 |
AT1G20696.2 | Thale cress | nucleus, plastid | 44.59 | 47.62 |
Os02t0670400-01 | Rice | nucleus | 43.95 | 47.59 |
KXG20955 | Sorghum | cytosol, extracellular, nucleus | 82.8 | 46.76 |
CDY31871 | Canola | plastid | 48.41 | 46.63 |
PGSC0003DMT400048091 | Potato | nucleus | 47.13 | 46.25 |
Os04t0564600-01 | Rice | nucleus | 30.57 | 36.36 |
Os01t0666200-01 | Rice | nucleus | 26.75 | 31.58 |
Os08t0101100-01 | Rice | nucleus | 36.31 | 28.08 |
PGSC0003DMT400043013 | Potato | nucleus | 38.85 | 26.18 |
Protein Annotations
Gene3D:1.10.30.10 | MapMan:35.2 | EntrezGene:4342129 | EMBL:AK062226 | ProteinID:BAD61823.1 | ProteinID:BAF20554.1 |
ProteinID:BAS99619.1 | ProteinID:EEE66392.1 | EMBL:EU847026 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | EnsemblPlantsGene:Os06g0728000 | EnsemblPlants:Os06t0728000-02 | PFAM:PF00505 |
PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | UniProt:Q5Z7N3 | SMART:SM00398 | SUPFAM:SSF47095 |
UniParc:UPI000005D6EB | RefSeq:XP_015643271.1 | RefSeq:XP_015643272.1 | SEG:seg | : | : |
Description
High mobility group protein B1, High mobility group subgroup B protein 1, high mobility group B1HMG1 protein (HMGB1). (Os06t0728000-01);HMG1 protein (HMGB1). (Os06t0728000-02)
Coordinates
chr6:+:30993285..30995120
Molecular Weight (calculated)
17100.6 Da
IEP (calculated)
5.589
GRAVY (calculated)
-1.415
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGAKSKGAA KPDAKLAVKS KGAEKPAAKG RKGKAGKDPN KPKRAPSAFF VFMEEFRKEF KEKNPKNKSV AAVGKAAGDR WKSLTEADKA PYVAKANKLK
101: AEYNKAIAAY NKGESTAKKA PAKEEEEDDE EESDKSKSEV NDEDDDEGSE EDEDDDE
101: AEYNKAIAAY NKGESTAKKA PAKEEEEDDE EESDKSKSEV NDEDDDEGSE EDEDDDE
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.