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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 19621931
nucleus: 23777608
plastid: 27992503
extracellular: 28232208
msms PMID: 23777608 doi
H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d014858_P001 Maize extracellular, mitochondrion 95.54 95.54
TraesCS7A01G552400.1 Wheat nucleus 89.17 86.96
TraesCS7D01G538400.2 Wheat nucleus 88.53 86.34
TraesCSU01G099700.3 Wheat nucleus 88.53 86.34
Zm00001d036355_P001 Maize nucleus 40.13 70.0
AT1G20693.1 Thale cress nucleus, plastid 59.87 65.28
PGSC0003DMT400003983 Potato extracellular, nucleus 55.41 61.7
VIT_04s0044g00110.t01 Wine grape nucleus 60.51 61.69
Solyc02g082700.2.1 Tomato nucleus 54.78 61.43
CDX96626 Canola nucleus, plastid 56.69 61.38
CDY29512 Canola nucleus, plastid 53.5 61.31
Bra025838.1-P Field mustard nucleus, plastid 53.5 61.31
CDY65900 Canola nucleus, plastid 56.05 61.11
CDY33643 Canola nucleus, plastid 56.05 60.69
Os09t0551600-01 Rice nucleus 49.04 60.63
HORVU7Hr1G121390.1 Barley nucleus, plastid 84.71 59.64
VIT_18s0122g01190.t01 Wine grape nucleus 57.32 58.82
CDY01357 Canola nucleus, plastid 51.59 57.45
KRH51597 Soybean nucleus 57.32 57.32
Solyc03g032130.2.1 Tomato nucleus 40.76 56.64
Bra012244.1-P Field mustard nucleus, plastid 35.03 55.56
KRH60915 Soybean nucleus 59.87 51.93
AT1G20696.2 Thale cress nucleus, plastid 44.59 47.62
Os02t0670400-01 Rice nucleus 43.95 47.59
KXG20955 Sorghum cytosol, extracellular, nucleus 82.8 46.76
CDY31871 Canola plastid 48.41 46.63
PGSC0003DMT400048091 Potato nucleus 47.13 46.25
Os04t0564600-01 Rice nucleus 30.57 36.36
Os01t0666200-01 Rice nucleus 26.75 31.58
Os08t0101100-01 Rice nucleus 36.31 28.08
PGSC0003DMT400043013 Potato nucleus 38.85 26.18
Protein Annotations
Gene3D:1.10.30.10MapMan:35.2EntrezGene:4342129EMBL:AK062226ProteinID:BAD61823.1ProteinID:BAF20554.1
ProteinID:BAS99619.1ProteinID:EEE66392.1EMBL:EU847026GO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634InterPro:HMG_box_dom
InterPro:HMG_box_dom_sfInterPro:IPR009071InterPro:IPR036910EnsemblPlantsGene:Os06g0728000EnsemblPlants:Os06t0728000-02PFAM:PF00505
PFscan:PS50118PANTHER:PTHR13711PANTHER:PTHR13711:SF284UniProt:Q5Z7N3SMART:SM00398SUPFAM:SSF47095
UniParc:UPI000005D6EBRefSeq:XP_015643271.1RefSeq:XP_015643272.1SEG:seg::
Description
High mobility group protein B1, High mobility group subgroup B protein 1, high mobility group B1HMG1 protein (HMGB1). (Os06t0728000-01);HMG1 protein (HMGB1). (Os06t0728000-02)
Coordinates
chr6:+:30993285..30995120
Molecular Weight (calculated)
17100.6 Da
IEP (calculated)
5.589
GRAVY (calculated)
-1.415
Length
157 amino acids
Sequence
(BLAST)
001: MKGAKSKGAA KPDAKLAVKS KGAEKPAAKG RKGKAGKDPN KPKRAPSAFF VFMEEFRKEF KEKNPKNKSV AAVGKAAGDR WKSLTEADKA PYVAKANKLK
101: AEYNKAIAAY NKGESTAKKA PAKEEEEDDE EESDKSKSEV NDEDDDEGSE EDEDDDE
Best Arabidopsis Sequence Match ( AT1G20693.2 )
(BLAST)
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.