Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012244.1-P | Field mustard | nucleus, plastid | 70.21 | 100.0 |
| CDY33643 | Canola | nucleus, plastid | 90.07 | 87.59 |
| CDX96626 | Canola | nucleus, plastid | 88.65 | 86.21 |
| CDY65900 | Canola | nucleus, plastid | 85.82 | 84.03 |
| CDY29512 | Canola | nucleus, plastid | 81.56 | 83.94 |
| CDY31871 | Canola | plastid | 95.04 | 82.21 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 80.14 | 78.47 |
| Solyc02g082700.2.1 | Tomato | nucleus | 63.83 | 64.29 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 63.83 | 63.83 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 68.79 | 63.4 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 63.12 | 60.54 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 65.96 | 60.39 |
| Solyc03g032130.2.1 | Tomato | nucleus | 46.81 | 58.41 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 51.06 | 58.06 |
| KRH51597 | Soybean | nucleus | 64.54 | 57.96 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 50.35 | 57.26 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 60.28 | 55.19 |
| Os09t0551600-01 | Rice | nucleus | 48.94 | 54.33 |
| CDX75512 | Canola | nucleus | 53.9 | 53.9 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 58.87 | 53.9 |
| GSMUA_Achr11P... | Banana | nucleus | 57.45 | 53.29 |
| CDY24349 | Canola | nucleus | 51.77 | 53.28 |
| CDX69149 | Canola | nucleus | 53.19 | 53.19 |
| KRH60915 | Soybean | nucleus | 68.09 | 53.04 |
| GSMUA_Achr10P... | Banana | nucleus | 57.45 | 52.6 |
| CDY64458 | Canola | nucleus | 51.06 | 52.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 52.48 | 52.48 |
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 58.16 | 52.23 |
| Os06t0728000-02 | Rice | nucleus | 57.45 | 51.59 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 58.16 | 50.93 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 58.16 | 50.93 |
| TraesCSU01G099700.3 | Wheat | nucleus | 58.16 | 50.93 |
| CDY26814 | Canola | nucleus | 46.81 | 50.77 |
| CDY30359 | Canola | nucleus | 48.94 | 50.74 |
| PGSC0003DMT400048091 | Potato | nucleus | 55.32 | 48.75 |
| Zm00001d021433_P002 | Maize | nucleus | 49.65 | 46.05 |
| CDX78045 | Canola | nucleus | 56.74 | 45.45 |
| CDX90629 | Canola | nucleus | 53.19 | 43.6 |
| CDY29051 | Canola | nucleus | 53.19 | 42.86 |
| Zm00001d036355_P001 | Maize | nucleus | 26.95 | 42.22 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 51.77 | 42.2 |
| OQU89887 | Sorghum | nucleus | 43.97 | 41.61 |
| Zm00001d006306_P006 | Maize | vacuole | 48.23 | 38.86 |
| Zm00001d006298_P001 | Maize | cytosol | 35.46 | 37.31 |
| CDY40620 | Canola | nucleus, plastid | 51.77 | 35.44 |
| CDX72548 | Canola | plastid | 51.77 | 35.44 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 56.03 | 35.43 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 51.06 | 29.75 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 53.19 | 26.98 |
| PGSC0003DMT400043013 | Potato | nucleus | 41.13 | 24.89 |
| CDX80362 | Canola | nucleus | 28.37 | 24.69 |
| CDY46957 | Canola | nucleus | 41.84 | 24.28 |
| CDY64875 | Canola | nucleus | 40.43 | 23.75 |
| CDY16851 | Canola | nucleus | 39.01 | 22.92 |
| CDY40795 | Canola | nucleus | 40.43 | 22.89 |
| CDX88025 | Canola | nucleus | 26.24 | 20.11 |
Protein Annotations
| EnsemblPlants:CDY01357 | EnsemblPlantsGene:GSBRNA2T00112332001 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | PFAM:PF00505 | PFscan:PS50118 |
| ProteinID:CDY01357 | ProteinID:CDY01357.1 | SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EF2722 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA07g11300D
Coordinates
chrLK031926:-:500176..501969
Molecular Weight (calculated)
15700.9 Da
IEP (calculated)
5.204
GRAVY (calculated)
-1.493
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGNSKSDS RNSKLSVNKK PTKASKAAAK DPNKPKRPAS AFFVFMEDFR QTYKKEHPDN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKTM
101: KAYNKKLEEG PKEDEESDDK SVSEVSEEED ADDGSDEEED D
101: KAYNKKLEEG PKEDEESDDK SVSEVSEEED ADDGSDEEED D
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.