Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P03630_001 | Banana | nucleus | 94.16 | 94.16 |
| GSMUA_Achr10P... | Banana | nucleus | 90.26 | 90.26 |
| GSMUA_Achr11P... | Banana | nucleus | 88.31 | 89.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 79.87 | 87.23 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 72.08 | 72.08 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 55.84 | 69.35 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 55.19 | 68.55 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 67.53 | 67.97 |
| Solyc02g082700.2.1 | Tomato | nucleus | 59.74 | 65.71 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 59.74 | 65.25 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 59.74 | 63.89 |
| Os09t0551600-01 | Rice | nucleus | 52.6 | 63.78 |
| CDX96626 | Canola | nucleus, plastid | 58.44 | 62.07 |
| CDY33643 | Canola | nucleus, plastid | 57.14 | 60.69 |
| CDY65900 | Canola | nucleus, plastid | 56.49 | 60.42 |
| CDY29512 | Canola | nucleus, plastid | 53.25 | 59.85 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 53.25 | 59.85 |
| GSMUA_Achr5P11630_001 | Banana | nucleus | 61.04 | 59.49 |
| CDY01357 | Canola | nucleus, plastid | 53.9 | 58.87 |
| GSMUA_Achr2P11060_001 | Banana | nucleus | 58.44 | 58.44 |
| Zm00001d021433_P002 | Maize | nucleus | 57.14 | 57.89 |
| KRH51597 | Soybean | nucleus | 58.44 | 57.32 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 34.42 | 53.54 |
| Solyc03g032130.2.1 | Tomato | nucleus | 38.31 | 52.21 |
| KRH60915 | Soybean | nucleus | 61.04 | 51.93 |
| OQU89887 | Sorghum | nucleus | 49.35 | 51.01 |
| PGSC0003DMT400048091 | Potato | nucleus | 51.3 | 49.38 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 46.75 | 48.98 |
| Zm00001d006306_P006 | Maize | vacuole | 55.19 | 48.57 |
| CDY31871 | Canola | plastid | 50.65 | 47.85 |
| Zm00001d006298_P001 | Maize | cytosol | 41.56 | 47.76 |
| GSMUA_Achr4P25860_001 | Banana | nucleus | 56.49 | 47.54 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 53.25 | 47.4 |
| GSMUA_Achr4P15000_001 | Banana | nucleus | 28.57 | 38.26 |
| GSMUA_Achr4P07950_001 | Banana | nucleus | 30.52 | 36.15 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 52.6 | 33.47 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.66 | 29.15 |
| PGSC0003DMT400043013 | Potato | nucleus | 43.51 | 28.76 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr9G21200_001 | EnsemblPlants:GSMUA_Achr9P21200_001 |
| EnsemblPlants:GSMUA_Achr9T21200_001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | UniProt:M0U279 |
| PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 | SUPFAM:SSF47095 |
| UniParc:UPI00029502DE | SEG:seg | : | : | : | : |
Description
HMG1/2-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G21200_001]
Coordinates
chr9:+:26209371..26211053
Molecular Weight (calculated)
17022.5 Da
IEP (calculated)
9.506
GRAVY (calculated)
-1.519
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRGKSKADA PKKADSKLSV KKGPERASKK PRKSKADKDP NKPKRPASAF FVFMEEFRKS FKEKNPNNKS VSVVGKAGGD KWKSLSEAEK APYVAKAAKF
101: KTEYTKKIAA YNKNQSGGGS HAAGDEDESD KSKSEVNDDE EDEEGTEEEE EDDE
101: KTEYTKKIAA YNKNQSGGGS HAAGDEDESD KSKSEVNDDE EDEEGTEEEE EDDE
001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD
Arabidopsis Description
HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.