Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G354800.1 | Wheat | nucleus | 46.69 | 91.13 |
| TraesCS5D01G359600.1 | Wheat | nucleus | 46.28 | 90.32 |
| Os09t0551600-01 | Rice | nucleus | 39.26 | 74.8 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 47.52 | 66.47 |
| Zm00001d021433_P002 | Maize | nucleus | 40.5 | 64.47 |
| OQU89887 | Sorghum | nucleus | 33.88 | 55.03 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 34.3 | 53.9 |
| Solyc02g082700.2.1 | Tomato | nucleus | 30.99 | 53.57 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 33.88 | 53.25 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 30.99 | 53.19 |
| Zm00001d006306_P006 | Maize | vacuole | 38.43 | 53.14 |
| GSMUA_Achr10P... | Banana | nucleus | 33.47 | 52.6 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 33.47 | 52.6 |
| CDY29512 | Canola | nucleus, plastid | 29.75 | 52.55 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 29.75 | 52.55 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 32.64 | 51.63 |
| Zm00001d006298_P001 | Maize | cytosol | 28.51 | 51.49 |
| GSMUA_Achr11P... | Banana | nucleus | 32.23 | 51.32 |
| CDY01357 | Canola | nucleus, plastid | 29.75 | 51.06 |
| CDX96626 | Canola | nucleus, plastid | 30.17 | 50.34 |
| CDY33643 | Canola | nucleus, plastid | 29.75 | 49.66 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 29.34 | 49.31 |
| CDY65900 | Canola | nucleus, plastid | 29.34 | 49.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.51 | 48.94 |
| KRH51597 | Soybean | nucleus | 30.99 | 47.77 |
| Solyc03g032130.2.1 | Tomato | nucleus | 21.9 | 46.9 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 17.77 | 43.43 |
| CDY31871 | Canola | plastid | 28.93 | 42.94 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 26.03 | 42.86 |
| KRH60915 | Soybean | nucleus | 31.41 | 41.99 |
| PGSC0003DMT400048091 | Potato | nucleus | 26.45 | 40.0 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 18.18 | 34.38 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 29.75 | 32.29 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 15.29 | 28.24 |
| PGSC0003DMT400043013 | Potato | nucleus | 23.14 | 24.03 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 21.07 | 22.67 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 18.18 | 15.17 |
| HORVU4Hr1G000120.13 | Barley | cytosol | 17.36 | 14.53 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A287S5C9 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | EnsemblPlantsGene:HORVU5Hr1G087340 | EnsemblPlants:HORVU5Hr1G087340.1 | InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI000B476FBE |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:578519307..578521471
Molecular Weight (calculated)
26197.1 Da
IEP (calculated)
10.904
GRAVY (calculated)
-1.021
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: EKPPGRCRQR KHAQPQTHPL TRRAHTPLPT RVKRVSRSGQ WEAGVRIVDV AGKFRGLPRK LPPPAPPLNP ALLLPTPPHP ASPPTHQHQA HAAPASSQSH
101: PTTPLAPIPR LAAGGRMKAK AGSRAGGSRL AVKKSKADKD PNKPKRPPSA FFVFMDTFRK EYREKHPDVK LASVIGKAGG EKWKSLSDAE KAPYNAKAEK
201: LKAEYTKKIN AYNNPQAGEA SGDSDKSKSE VNDEDDGSEG DA
101: PTTPLAPIPR LAAGGRMKAK AGSRAGGSRL AVKKSKADKD PNKPKRPPSA FFVFMDTFRK EYREKHPDVK LASVIGKAGG EKWKSLSDAE KAPYNAKAEK
201: LKAEYTKKIN AYNNPQAGEA SGDSDKSKSE VNDEDDGSEG DA
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.