Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 12.46 | 28.12 |
| TraesCS3D01G497500.1 | Wheat | cytosol, mitochondrion, nucleus | 15.92 | 27.54 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 15.92 | 20.44 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 14.53 | 18.83 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 8.3 | 18.32 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 14.53 | 17.36 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 13.15 | 13.1 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.2 | UniProt:A0A287MVF1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | EnsemblPlantsGene:HORVU4Hr1G000120 | EnsemblPlants:HORVU4Hr1G000120.13 | InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF308 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI000B47A5E1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:388806..391525
Molecular Weight (calculated)
31966.2 Da
IEP (calculated)
10.114
GRAVY (calculated)
-0.698
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: CEPTLYSCSK MKTKTEASSS GKPKRPATAY ILFIDEFKKE HPEMKKVTEI SKAASREWAR LGITGQASYF AEYRRLMEVY NQSKNVSVNT CDKPKRPPTA
101: FFLFQQKFKQ SHPALTKVVE ISKAAGEEWR ALGDAGRAPF FAEYDKLMDA FMQKKYPTNN PRAAPRRCPC ACRCCRRCHV PAVPLSSPPP PQATSNSRAV
201: ASTVDGYSRA VASTFDGLNC EHVNDYSESE WTGLKHEGTV SGLEPSSLRS VKKKPVPRRG GLEQEGEVGP SPAMSVKKKP VPRRGGLRX
101: FFLFQQKFKQ SHPALTKVVE ISKAAGEEWR ALGDAGRAPF FAEYDKLMDA FMQKKYPTNN PRAAPRRCPC ACRCCRRCHV PAVPLSSPPP PQATSNSRAV
201: ASTVDGYSRA VASTFDGLNC EHVNDYSESE WTGLKHEGTV SGLEPSSLRS VKKKPVPRRG GLEQEGEVGP SPAMSVKKKP VPRRGGLRX
001: MKGAKSKAET RSTKLSVTKK PAKGAKGAAK DPNKPKRPSS AFFVFMEDFR VTYKEEHPKN KSVAAVGKAG GEKWKSLSDS EKAPYVAKAD KRKVEYEKNM
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
101: KAYNKKLEEG PKEDEESDKS VSEVNDEDDA EDGSEEEEDD D
Arabidopsis Description
HMGB3high mobility group B3 [Source:TAIR;Acc:AT1G20696]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.