Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G359600.1 | Wheat | nucleus | 29.94 | 40.32 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 26.95 | 32.37 |
| TraesCS3D01G242800.1 | Wheat | nucleus | 23.95 | 31.01 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 26.35 | 27.33 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 19.76 | 27.27 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 20.96 | 16.2 |
| HORVU4Hr1G000120.13 | Barley | cytosol | 27.54 | 15.92 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G497500.1 | EnsemblPlantsGene:TraesCS3D01G497500 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | PFAM:PF00505 | PFscan:PS50118 | SEG:seg |
| SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3D:+:588728598..588729768
Molecular Weight (calculated)
18662.2 Da
IEP (calculated)
9.460
GRAVY (calculated)
-0.744
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MKPMVRSNSG GGSDRRGWLA WRKTKCGKNS NMPKQPPSAF FLFLEDFSLE YKLEHPNVKV SSVINKAGGD RWRAMSDADK ASYCVMAEHR RAEYAKAMEA
101: YNNPGEPGQH EVAHKVEPAD VMYNQGEVGQ REVVEHDALA PSTTTRSSLR MRCRMVPTSS HGTLAMT
101: YNNPGEPGQH EVAHKVEPAD VMYNQGEVGQ REVVEHDALA PSTTTRSSLR MRCRMVPTSS HGTLAMT
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE LLEKEAAGDD EEEEEEEDDD DDDDEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE LLEKEAAGDD EEEEEEEDDD DDDDEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.