Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G401100.1 | Wheat | nucleus | 87.5 | 92.56 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 87.5 | 92.56 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 85.94 | 91.67 |
| Os04t0564600-01 | Rice | nucleus | 75.0 | 72.73 |
| KXG26906 | Sorghum | nucleus | 63.28 | 68.07 |
| Zm00001d002659_P001 | Maize | nucleus | 64.84 | 67.48 |
| CDY24349 | Canola | nucleus | 38.28 | 35.77 |
| CDY64458 | Canola | nucleus | 37.5 | 35.04 |
| CDY26814 | Canola | nucleus | 35.16 | 34.62 |
| CDY30359 | Canola | nucleus | 35.94 | 33.82 |
| KRH07880 | Soybean | nucleus | 36.72 | 33.81 |
| KRH39434 | Soybean | nucleus | 37.5 | 33.8 |
| CDX75512 | Canola | nucleus | 36.72 | 33.33 |
| CDX69149 | Canola | nucleus | 36.72 | 33.33 |
| Bra011624.1-P | Field mustard | nucleus | 36.72 | 33.33 |
| AT2G17560.1 | Thale cress | nucleus | 33.59 | 31.16 |
| Bra002073.1-P | Field mustard | nucleus | 37.5 | 30.57 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 53.12 | 30.22 |
| AT4G35570.1 | Thale cress | nucleus | 25.0 | 25.6 |
| CDY40620 | Canola | nucleus, plastid | 39.06 | 24.27 |
| CDX72548 | Canola | plastid | 39.06 | 24.27 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 38.28 | 23.11 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 23.44 | 22.9 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 39.84 | 22.87 |
| Bra037266.1-P | Field mustard | endoplasmic reticulum, vacuole | 34.38 | 18.33 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 34.38 | 18.18 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 34.38 | 15.17 |
| HORVU4Hr1G000120.13 | Barley | cytosol | 28.12 | 12.46 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| EnsemblPlantsGene:HORVU2Hr1G095890 | EnsemblPlants:HORVU2Hr1G095890.3 | InterPro:IPR009071 | InterPro:IPR036910 | UniProt:M0X681 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF308 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI000294C3B4 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:672009579..672011461
Molecular Weight (calculated)
13807.9 Da
IEP (calculated)
8.852
GRAVY (calculated)
-1.213
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSKANGDAA FKASGKSKTA TGGVTKPKRA PTPFFVFLAE FRPQYMEKHP EAKGVAAVTK AAGEKWRSMS DEEKAKYGGK KADAPASKAV KKKESTTSKK
101: AKTDADEEEE GSDKSKSDVE DDAEDDEE
101: AKTDADEEEE GSDKSKSDVE DDAEDDEE
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAEA EDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAEA EDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.