Factsheet for HORVU6Hr1G064720.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G253900.1	Wheat	nucleus	56.0	90.65
TraesCS6D01G235400.1	Wheat	nucleus	55.56	89.93
TraesCS6B01G271600.1	Wheat	nucleus	55.11	89.21
Os02t0670400-01	Rice	nucleus	50.22	77.93
OQU85655	Sorghum	nucleus	45.78	77.44
Zm00001d051427_P002	Maize	nucleus	45.33	56.67
Zm00001d017555_P001	Maize	nucleus	43.11	55.75
HORVU2Hr1G095890.3	Barley	nucleus, plastid	30.22	53.12
CDX69149	Canola	nucleus	31.11	49.65
Bra011624.1-P	Field mustard	nucleus	30.67	48.94
CDX75512	Canola	nucleus	30.67	48.94
KRH39434	Soybean	nucleus	29.78	47.18
AT2G17560.1	Thale cress	nucleus	28.89	47.1
CDY26814	Canola	nucleus	27.11	46.92
KRH07880	Soybean	nucleus	28.89	46.76
CDY64458	Canola	nucleus	27.11	44.53
CDY24349	Canola	nucleus	27.11	44.53
CDY30359	Canola	nucleus	26.67	44.12
Bra002073.1-P	Field mustard	nucleus	26.67	38.22
AT4G35570.1	Thale cress	nucleus	20.89	37.6
CDY40620	Canola	nucleus, plastid	33.33	36.41
CDX72548	Canola	plastid	33.33	36.41
Bra017723.1-P	Field mustard	nucleus, plastid	31.56	33.49
HORVU7Hr1G121390.1	Barley	nucleus, plastid	28.89	29.15
HORVU3Hr1G060620.1	Barley	nucleus	16.44	28.24
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	29.78	27.92
HORVU7Hr1G078760.8	Barley	nucleus, plastid	28.0	21.72
HORVU5Hr1G087340.1	Barley	mitochondrion	22.67	21.07
Zm00001d031233_P001	Maize	vacuole	17.78	17.86
HORVU4Hr1G000120.13	Barley	cytosol	20.44	15.92

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	UniProt:A0A287UG61	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	EnsemblPlantsGene:HORVU6Hr1G064720	EnsemblPlants:HORVU6Hr1G064720.1	InterPro:IPR009071	InterPro:IPR036910
PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF308	SMART:SM00398	SUPFAM:SSF47095
UniParc:UPI000B481E92	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr6H:+:441592528..441594053

Molecular Weight (calculated)

24334.8 Da

IEP (calculated)

9.914

GRAVY (calculated)

-1.384

Length

225 amino acids

Sequence
(BLAST)

001: GKHSAHASQR LHPPNPHRCP LSPVSRTPTR PRGPAPHNGS PQSQQTQHQQ PQPFPPTLPN QSAPLLRSAP PQNPSSVPSA ASTMKGKADA SKKGEGRLKA
101: AGGASKRKKA AAAAGKPKRP PSAFFVFMSD FRQQYNAENP NNKNVANVSK AAGEKWRSMS DEDKAPYVEK AGQKKQDYEK TKASFENKES VSSKKAKTQD
201: DEEAEGSKSE VEDEGSDEDN EDDDE

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.