Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 4
- vacuole 4
- extracellular 3
- endoplasmic reticulum 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30359 | Canola | nucleus | 54.58 | 96.32 |
| CDY26814 | Canola | nucleus | 48.75 | 90.0 |
| Bra002073.1-P | Field mustard | nucleus | 52.08 | 79.62 |
| AT2G17560.1 | Thale cress | nucleus | 43.33 | 75.36 |
| Bra011624.1-P | Field mustard | nucleus | 38.33 | 65.25 |
| Bra017723.1-P | Field mustard | nucleus, plastid | 42.08 | 47.64 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 26.25 | 45.99 |
| KRH39434 | Soybean | nucleus | 27.08 | 45.77 |
| KRH07880 | Soybean | nucleus | 26.25 | 45.32 |
| TraesCS6D01G235400.1 | Wheat | nucleus | 25.42 | 43.88 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 17.92 | 43.43 |
| TraesCS6A01G253900.1 | Wheat | nucleus | 25.0 | 43.17 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 24.58 | 42.45 |
| OQU85655 | Sorghum | nucleus | 23.33 | 42.11 |
| Os02t0670400-01 | Rice | nucleus | 25.42 | 42.07 |
| Os04t0564600-01 | Rice | nucleus | 19.17 | 34.85 |
| HORVU2Hr1G095890.3 | Barley | nucleus, plastid | 18.33 | 34.38 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 17.08 | 34.17 |
| TraesCS2A01G404100.1 | Wheat | nucleus | 17.08 | 33.88 |
| TraesCS2D01G401100.1 | Wheat | nucleus | 17.08 | 33.88 |
| KXG26906 | Sorghum | nucleus | 16.67 | 33.61 |
| Zm00001d002659_P001 | Maize | nucleus | 17.08 | 33.33 |
| Bra012832.1-P | Field mustard | nucleus | 22.08 | 33.33 |
| Zm00001d051427_P002 | Maize | nucleus | 22.5 | 30.0 |
| Zm00001d017555_P001 | Maize | nucleus | 21.67 | 29.89 |
| HORVU6Hr1G064720.1 | Barley | nucleus, plastid | 27.92 | 29.78 |
| Bra021911.1-P | Field mustard | nucleus | 16.25 | 25.83 |
| Bra029371.1-P | Field mustard | nucleus | 24.58 | 24.28 |
| Bra026498.1-P | Field mustard | nucleus | 24.17 | 23.58 |
| Bra009681.1-P | Field mustard | nucleus | 14.58 | 22.01 |
| Zm00001d031233_P001 | Maize | vacuole | 14.17 | 15.18 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EnsemblPlantsGene:Bra037266 | EnsemblPlants:Bra037266.1 | EnsemblPlants:Bra037266.1-P | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | UniProt:M4F855 |
| PFAM:PF00505 | PFAM:PF08571 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF222 | SMART:SM00398 |
| SUPFAM:SSF47095 | SignalP:SignalP-noTM | UniParc:UPI0002541E01 | InterPro:Yos1 | SEG:seg | : |
Description
AT2G37975 (E=6e-031) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Yos1-like (InterPro:IPR013880); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G54085.2); Has 146 Blast hits to 146 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 89; Fungi - 25; Plants - 26; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Coordinates
chrA09:-:4658467..4660489
Molecular Weight (calculated)
26730.6 Da
IEP (calculated)
8.953
GRAVY (calculated)
-0.672
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFWTLMEGL LLFANALAIL NEDRFLAPTG WTLAELHQTG KRNSLKGQVV GLIHACQYMR LPLMLFNLIV IVFKLFSGKK QLAPTDSVRV SNDSSFPHPP
101: DSMKGGQTKL EATSTDQRLK TRGRKKKTTT TTKDPNKPKR PPSAFFVFLD DFRREFNEAN PNNKSVAAVG KAAGAQWKSM SEEEKAPYAS KAESRKSEYL
201: KSMQQYNMIL ASGTNRGEDA ESKSEVDEAG GSNEEEEDED
101: DSMKGGQTKL EATSTDQRLK TRGRKKKTTT TTKDPNKPKR PPSAFFVFLD DFRREFNEAN PNNKSVAAVG KAAGAQWKSM SEEEKAPYAS KAESRKSEYL
201: KSMQQYNMIL ASGTNRGEDA ESKSEVDEAG GSNEEEEDED
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.