Factsheet for Os04t0564600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 19621931
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G095890.3	Barley	nucleus, plastid	72.73	75.0
TraesCS2A01G404100.1	Wheat	nucleus	66.67	72.73
TraesCS2D01G401100.1	Wheat	nucleus	65.91	71.9
TraesCS2B01G422000.1	Wheat	nucleus	65.15	71.67
Zm00001d002659_P001	Maize	nucleus	65.91	70.73
KXG26906	Sorghum	nucleus	62.12	68.91
Os02t0670400-01	Rice	nucleus	59.85	54.48
CDY30359	Canola	nucleus	36.36	35.29
CDY64458	Canola	nucleus	36.36	35.04
CDY24349	Canola	nucleus	36.36	35.04
CDY26814	Canola	nucleus	33.33	33.85
KRH07880	Soybean	nucleus	35.61	33.81
KRH39434	Soybean	nucleus	36.36	33.8
CDX75512	Canola	nucleus	35.61	33.33
AT2G17560.1	Thale cress	nucleus	34.85	33.33
CDX69149	Canola	nucleus	35.61	33.33
Bra011624.1-P	Field mustard	nucleus	35.61	33.33
Os09t0551600-01	Rice	nucleus	30.3	31.5
Os06t0728000-02	Rice	nucleus	36.36	30.57
Bra002073.1-P	Field mustard	nucleus	35.61	29.94
AT4G35570.1	Thale cress	nucleus	23.48	24.8
CDX72548	Canola	plastid	37.12	23.79
CDY40620	Canola	nucleus, plastid	37.12	23.79
Os01t0666200-01	Rice	nucleus	23.48	23.31
Bra017723.1-P	Field mustard	nucleus, plastid	35.61	22.17
Os08t0101100-01	Rice	nucleus	31.06	20.2
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	34.85	19.17

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.2	EntrezGene:4336676	EMBL:AK120614	ProteinID:BAF15484.1	ProteinID:BAS90511.1
ProteinID:CAE03091.2	ProteinID:EEE61508.1	EMBL:EU847027	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom
InterPro:HMG_box_dom_sf	EMBL:HQ858874	InterPro:IPR009071	InterPro:IPR036910	EnsemblPlantsGene:Os04g0564600	EnsemblPlants:Os04t0564600-01
PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF308	UniProt:Q7XQK2	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI000021C6E1	RefSeq:XP_015637123.1	SEG:seg	:	:

Description

Similar to HMG1 protein. (Os04t0564600-01);Similar to H0409D10.9 protein. (Os04t0564600-02)

Coordinates

chr4:+:28293203..28296131

Molecular Weight (calculated)

14003.0 Da

IEP (calculated)

8.852

GRAVY (calculated)

-1.322

Length

132 amino acids

Sequence
(BLAST)

001: MGKADADAEF KAAGKRKKAG GAGKPKRGLT PFFAFLAEFR PQYMEKHPNT KGVAAVTKAA GEKWRAMSDE EKAQYGGKKP DGESKPAAAS KKKESTSSKK
101: AKTDGAEQEG EGSDKSKSDV EDDENDGSGE DE

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.