Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G060620.1 | Barley | nucleus | 75.19 | 76.34 |
| TraesCS3D01G242800.1 | Wheat | nucleus | 73.68 | 75.97 |
| TraesCS3A01G242800.1 | Wheat | nucleus | 72.93 | 75.19 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 66.17 | 63.31 |
| GSMUA_Achr4P15000_001 | Banana | nucleus | 52.63 | 60.87 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 47.37 | 56.76 |
| GSMUA_Achr4P07950_001 | Banana | nucleus | 51.13 | 52.31 |
| OQU87294 | Sorghum | plastid | 71.43 | 50.26 |
| KRH42324 | Soybean | plastid | 50.38 | 45.27 |
| Bra021911.1-P | Field mustard | nucleus | 49.62 | 43.71 |
| KRH58452 | Soybean | nucleus, plastid | 48.87 | 43.33 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 48.12 | 42.11 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 73.68 | 40.83 |
| Os09t0551600-01 | Rice | nucleus | 27.82 | 29.13 |
| KRH58451 | Soybean | extracellular | 30.83 | 29.08 |
| Os02t0670400-01 | Rice | nucleus | 31.58 | 28.97 |
| Os06t0728000-02 | Rice | nucleus | 31.58 | 26.75 |
| Os04t0564600-01 | Rice | nucleus | 23.31 | 23.48 |
| Os08t0101100-01 | Rice | nucleus | 32.33 | 21.18 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:4326858 | EMBL:AK064663 | ProteinID:BAD73639.1 | ProteinID:BAF05713.2 |
| ProteinID:BAS73578.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf |
| InterPro:IPR009071 | InterPro:IPR036910 | EnsemblPlantsGene:Os01g0666200 | EnsemblPlants:Os01t0666200-01 | PFAM:PF00505 | PFscan:PS50118 |
| PANTHER:PTHR13711 | PANTHER:PTHR13711:SF200 | UniProt:Q5QLQ9 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI000048E01B |
| RefSeq:XP_015620110.1 | SEG:seg | : | : | : | : |
Description
High mobility group, HMG1/HMG2 domain containing protein. (Os01t0666200-01)
Coordinates
chr1:+:27236519..27239874
Molecular Weight (calculated)
15565.6 Da
IEP (calculated)
10.166
GRAVY (calculated)
-1.386
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTRSQTAPK PLKTVRLPPV KPRPKPPPPQ PQPPPSRKKG QPLVDRRRPK KPPTAFFYFM EDFRKTYKEE NPSVKSMQEV GKACGEKWNT MTFEERVKYY
101: DIATEKRAEY EKAVAEFDKK KESGELSEES DYD
101: DIATEKRAEY EKAVAEFDKK KESGELSEES DYD
001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREIGKTCGE
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
Arabidopsis Description
HMG-box (high mobility group) DNA-binding family protein [Source:TAIR;Acc:AT2G34450]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.