Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G359600.1 | Wheat | nucleus | 76.38 | 78.23 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 76.38 | 78.23 |
| Zm00001d021433_P002 | Maize | nucleus | 87.4 | 73.03 |
| OQU89887 | Sorghum | nucleus | 72.44 | 61.74 |
| Zm00001d006298_P001 | Maize | cytosol | 63.78 | 60.45 |
| Zm00001d006306_P006 | Maize | vacuole | 81.89 | 59.43 |
| TraesCS5A01G352100.2 | Wheat | nucleus | 77.17 | 56.65 |
| GSMUA_Achr10P... | Banana | nucleus | 66.14 | 54.55 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 66.14 | 54.55 |
| Solyc02g082700.2.1 | Tomato | nucleus | 59.84 | 54.29 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 59.84 | 53.9 |
| GSMUA_Achr11P... | Banana | nucleus | 63.78 | 53.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.06 | 53.19 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 63.78 | 52.94 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 63.78 | 52.6 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 62.2 | 51.3 |
| CDX96626 | Canola | nucleus, plastid | 56.69 | 49.66 |
| Os06t0728000-02 | Rice | nucleus | 60.63 | 49.04 |
| CDY01357 | Canola | nucleus, plastid | 54.33 | 48.94 |
| Solyc03g032130.2.1 | Tomato | nucleus | 43.31 | 48.67 |
| CDY33643 | Canola | nucleus, plastid | 55.12 | 48.28 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 51.97 | 48.18 |
| CDY29512 | Canola | nucleus, plastid | 51.97 | 48.18 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 54.33 | 47.92 |
| KRH51597 | Soybean | nucleus | 59.06 | 47.77 |
| CDY65900 | Canola | nucleus, plastid | 52.76 | 46.53 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 34.65 | 44.44 |
| KRH60915 | Soybean | nucleus | 59.84 | 41.99 |
| CDY31871 | Canola | plastid | 53.54 | 41.72 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 48.03 | 41.5 |
| PGSC0003DMT400048091 | Potato | nucleus | 51.18 | 40.62 |
| HORVU5Hr1G087340.1 | Barley | mitochondrion | 74.8 | 39.26 |
| Os02t0670400-01 | Rice | nucleus | 40.16 | 35.17 |
| Os04t0564600-01 | Rice | nucleus | 31.5 | 30.3 |
| Os01t0666200-01 | Rice | nucleus | 29.13 | 27.82 |
| Os08t0101100-01 | Rice | nucleus | 37.01 | 23.15 |
| PGSC0003DMT400043013 | Potato | nucleus | 40.94 | 22.32 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:4347789 | EMBL:AK066658 | ProteinID:BAD33893.1 | ProteinID:BAF25783.1 |
| ProteinID:BAT09314.1 | ncoils:Coil | EMBL:EU847019 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:HMG_box_dom |
| InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | EnsemblPlantsGene:Os09g0551600 | EnsemblPlants:Os09t0551600-01 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | UniProt:Q69MM2 | SMART:SM00398 | SUPFAM:SSF47095 |
| UniParc:UPI00003FF489 | RefSeq:XP_015651271.1 | : | : | : | : |
Description
Similar to HMGd1 protein (Nucleasome/chromatin assembly factor D protein NFD101). (Os09t0551600-01)
Coordinates
chr9:+:21856873..21858935
Molecular Weight (calculated)
14089.4 Da
IEP (calculated)
10.191
GRAVY (calculated)
-1.331
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MKARSRSSNG DSRLSVRKTK AEKDPNKPKR PPSAFFVFME QFRKDYKEKH PNVKQVSVIG KAGGDKWKSM TDADKAPFVT KAEKLKAEYT KKIDAYNNKQ
101: AGGPATSGDS DKSKSEVNDE DEGSGDE
101: AGGPATSGDS DKSKSEVNDE DEGSGDE
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE LLEKEAAGDD EEEEEEEDDD DDDDEEED
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE LLEKEAAGDD EEEEEEEDDD DDDDEEED
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.