Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P15000_001 | Banana | nucleus | 76.15 | 86.09 |
| Os01t0666200-01 | Rice | nucleus | 52.31 | 51.13 |
| TraesCS3D01G242800.1 | Wheat | nucleus | 50.0 | 50.39 |
| TraesCS3A01G242800.1 | Wheat | nucleus | 50.0 | 50.39 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 52.31 | 48.92 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 49.23 | 48.85 |
| KRH42324 | Soybean | plastid | 55.38 | 48.65 |
| KRH58452 | Soybean | nucleus, plastid | 54.62 | 47.33 |
| Bra021911.1-P | Field mustard | nucleus | 53.08 | 45.7 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 52.31 | 44.74 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 34.62 | 40.54 |
| OQU87294 | Sorghum | plastid | 55.38 | 38.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.92 | 34.04 |
| KRH58451 | Soybean | extracellular | 36.15 | 33.33 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 36.15 | 30.52 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 36.15 | 30.52 |
| GSMUA_Achr10P... | Banana | nucleus | 36.15 | 30.52 |
| GSMUA_Achr11P... | Banana | nucleus | 35.38 | 30.26 |
| GSMUA_Achr5P11630_001 | Banana | nucleus | 36.15 | 29.75 |
| GSMUA_Achr2P11060_001 | Banana | nucleus | 33.08 | 27.92 |
| TraesCS3B01G270900.1 | Wheat | nucleus | 51.54 | 27.92 |
| GSMUA_Achr4P25860_001 | Banana | nucleus | 33.85 | 24.04 |
| GSMUA_AchrUn_... | Banana | nucleus | 35.38 | 23.12 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr4G07950_001 | EnsemblPlants:GSMUA_Achr4P07950_001 |
| EnsemblPlants:GSMUA_Achr4T07950_001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | UniProt:M0SM12 |
| PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF200 | SMART:SM00398 | SUPFAM:SSF47095 |
| UniParc:UPI0002968654 | SEG:seg | : | : | : | : |
Description
DNA-binding protein MNB1B, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G07950_001]
Coordinates
chr4:-:5896152..5900803
Molecular Weight (calculated)
15079.8 Da
IEP (calculated)
10.203
GRAVY (calculated)
-1.355
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: METRAKRAKA TETATKPRKD ASKKPKAKAK RKPSSSAKND HRDKPKKPPT AFFYYLEDFR KTFQQENPNV KSMRDIGKAC GEKWKTMSFE EKVAYYDIAT
101: EKRAEFEKAM AAYIKRMESG EFSEGSDDYE
101: EKRAEFEKAM AAYIKRMESG EFSEGSDDYE
001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREIGKTCGE
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
Arabidopsis Description
HMG-box (high mobility group) DNA-binding family protein [Source:TAIR;Acc:AT2G34450]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.