Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P11630_001 | Banana | nucleus | 85.71 | 83.54 |
| GSMUA_Achr4P25860_001 | Banana | nucleus | 74.68 | 62.84 |
| GSMUA_Achr2P03630_001 | Banana | nucleus | 60.39 | 60.39 |
| GSMUA_Achr10P... | Banana | nucleus | 59.09 | 59.09 |
| GSMUA_Achr11P... | Banana | nucleus | 57.79 | 58.55 |
| GSMUA_Achr9P21200_001 | Banana | nucleus | 58.44 | 58.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 53.25 | 58.16 |
| GSMUA_Achr4P15000_001 | Banana | nucleus | 25.97 | 34.78 |
| GSMUA_Achr4P07950_001 | Banana | nucleus | 27.92 | 33.08 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.12 | 25.63 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr2G11060_001 |
| EnsemblPlants:GSMUA_Achr2P11060_001 | EnsemblPlants:GSMUA_Achr2T11060_001 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 |
| UniProt:M0S6Z7 | PFAM:PF00505 | PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | SMART:SM00398 |
| SUPFAM:SSF47095 | UniParc:UPI0002965D1F | SEG:seg | : | : | : |
Description
HMG1/2-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G11060_001]
Coordinates
chr2:-:14011113..14012417
Molecular Weight (calculated)
16947.5 Da
IEP (calculated)
8.955
GRAVY (calculated)
-1.392
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGGKSRAAA SSKDDTKVAG KRKAADNQGK RAKRGKAGKD PNKPKRPPSA FFVFMEEFRK EFQEKHPENK KVSVVSKACG DKWKSMSEAD KAPYVAKAAK
101: RKAEYEKIIA SYNKKQSEGS SGNASPAEEV VEEGSKSEVD DEEDGNGEEE EDEE
101: RKAEYEKIIA SYNKKQSEGS SGNASPAEEV VEEGSKSEVD DEEDGNGEEE EDEE
001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAEA EDDD
101: QQYNLKLASG TNREEDDSDK SKSEVDEAEA EDDD
Arabidopsis Description
HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.