Factsheet for GSMUA_Achr4P25860_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P11630_001	Banana	nucleus	64.48	74.68
GSMUA_Achr2P11060_001	Banana	nucleus	62.84	74.68
GSMUA_Achr2P03630_001	Banana	nucleus	48.63	57.79
GSMUA_AchrUn_...	Banana	nucleus	44.26	57.45
GSMUA_Achr11P...	Banana	nucleus	46.99	56.58
GSMUA_Achr10P...	Banana	nucleus	47.54	56.49
GSMUA_Achr9P21200_001	Banana	nucleus	47.54	56.49
GSMUA_Achr4P15000_001	Banana	nucleus	21.86	34.78
GSMUA_Achr4P07950_001	Banana	nucleus	24.04	33.85
GSMUA_AchrUn_...	Banana	nucleus	30.6	28.14

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr4G25860_001	EnsemblPlants:GSMUA_Achr4P25860_001
EnsemblPlants:GSMUA_Achr4T25860_001	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	UniProt:M0SS47
PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF284	SMART:SM00398	SUPFAM:SSF47095
UniParc:UPI000295E13C	SEG:seg	:	:	:	:

Description

HMG1/2-like protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G25860_001]

Coordinates

chr4:+:25198374..25200089

Molecular Weight (calculated)

20356.9 Da

IEP (calculated)

8.429

GRAVY (calculated)

-1.144

Length

183 amino acids

Sequence
(BLAST)

001: MCILSKYCLN PASLQLCRIV SPLPNLNPNI ELYTMRGGKS KAAASRKDGD KVAGKRKAAG DEDKKAKRGK VGKDANKPKR PPSAFFVFME EFRKTFKEKH
101: PDNKKVSVVS KAGGNNWKSM SEAEKAPYVD KAAKRKAEYE KSMVLYNKKQ SEEVEAEGSD KSKSEVDDEE DGDGDGEEEE DEE

Best Arabidopsis Sequence Match ( AT3G51880.2 )
(BLAST)

001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEVT IPLSNEELLE KEAAGDDEEE EEEEDDDDDD DEEED

Arabidopsis Description

HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.