Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 5
- vacuole 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G242800.1 | Wheat | nucleus | 52.5 | 97.67 |
| HORVU3Hr1G060620.1 | Barley | nucleus | 52.5 | 96.18 |
| TraesCS3A01G242800.1 | Wheat | nucleus | 51.67 | 96.12 |
| Os01t0666200-01 | Rice | nucleus | 40.83 | 73.68 |
| OQU87294 | Sorghum | plastid | 46.67 | 59.26 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 34.17 | 58.99 |
| GSMUA_Achr4P15000_001 | Banana | nucleus | 27.5 | 57.39 |
| GSMUA_Achr4P07950_001 | Banana | nucleus | 27.92 | 51.54 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 23.33 | 50.45 |
| KRH42324 | Soybean | plastid | 28.33 | 45.95 |
| KRH58452 | Soybean | nucleus, plastid | 27.5 | 44.0 |
| Bra021911.1-P | Field mustard | nucleus | 26.25 | 41.72 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 24.17 | 38.16 |
| TraesCS5B01G354800.1 | Wheat | nucleus | 16.67 | 32.26 |
| KRH58451 | Soybean | extracellular | 18.33 | 31.21 |
| TraesCS6B01G271600.1 | Wheat | nucleus | 15.0 | 25.9 |
| TraesCS2B01G422000.1 | Wheat | nucleus | 12.08 | 24.17 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 17.5 | 19.53 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G270900.1 | EnsemblPlantsGene:TraesCS3B01G270900 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF200 | PFAM:PF00505 | PFscan:PS50118 |
| SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | TIGR:cd01390 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr3B:+:436558267..436562351
Molecular Weight (calculated)
27252.2 Da
IEP (calculated)
11.020
GRAVY (calculated)
-0.912
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSPVRPSPH LIPGHPSRSF PRNQCGTKLT QPPCTEQNRP TQLIRRSGRA SNPCWAVPSP GPCKPGSPAR RQVIRSLLLC AALLCFFLLP PPASRPTPLY
101: ARRAREKCGM KTRSQTTPKP LNTVRLPPVE SPRARPRPKP KPRPETRKKG ALGDLRRPKK PPTAFFYFME DFRKTFQVEN PSVKAMQDVG KACGEKWNKM
201: AFEEKVKYYD LATERRAEFE KAMAQYNKKK MNGELSEESE
101: ARRAREKCGM KTRSQTTPKP LNTVRLPPVE SPRARPRPKP KPRPETRKKG ALGDLRRPKK PPTAFFYFME DFRKTFQVEN PSVKAMQDVG KACGEKWNKM
201: AFEEKVKYYD LATERRAEFE KAMAQYNKKK MNGELSEESE
001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREIGKTCGE
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
Arabidopsis Description
HMG-box (high mobility group) DNA-binding family protein [Source:TAIR;Acc:AT2G34450]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.