Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d014858_P001 | Maize | extracellular, mitochondrion | 71.11 | 40.76 |
| Os06t0728000-02 | Rice | nucleus | 70.0 | 40.13 |
| TraesCSU01G099700.3 | Wheat | nucleus | 67.78 | 37.89 |
| TraesCS7D01G538400.2 | Wheat | nucleus | 67.78 | 37.89 |
| TraesCS7A01G552400.1 | Wheat | nucleus | 67.78 | 37.89 |
| Solyc02g082700.2.1 | Tomato | nucleus | 47.78 | 30.71 |
| VIT_04s0044g00110.t01 | Wine grape | nucleus | 52.22 | 30.52 |
| PGSC0003DMT400003983 | Potato | extracellular, nucleus | 47.78 | 30.5 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 47.78 | 29.86 |
| Bra025838.1-P | Field mustard | nucleus, plastid | 43.33 | 28.47 |
| CDY29512 | Canola | nucleus, plastid | 43.33 | 28.47 |
| Bra012244.1-P | Field mustard | nucleus, plastid | 31.11 | 28.28 |
| VIT_18s0122g01190.t01 | Wine grape | nucleus | 47.78 | 28.1 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 45.56 | 27.89 |
| CDY65900 | Canola | nucleus, plastid | 44.44 | 27.78 |
| CDY33643 | Canola | nucleus, plastid | 44.44 | 27.59 |
| CDX96626 | Canola | nucleus, plastid | 44.44 | 27.59 |
| HORVU7Hr1G121390.1 | Barley | nucleus, plastid | 67.78 | 27.35 |
| CDY01357 | Canola | nucleus, plastid | 42.22 | 26.95 |
| KRH51597 | Soybean | nucleus | 46.67 | 26.75 |
| Zm00001d021433_P002 | Maize | nucleus | 44.44 | 26.32 |
| PGSC0003DMT400048091 | Potato | nucleus | 45.56 | 25.62 |
| KRH60915 | Soybean | nucleus | 47.78 | 23.76 |
| CDY31871 | Canola | plastid | 42.22 | 23.31 |
| Zm00001d006306_P006 | Maize | vacuole | 44.44 | 22.86 |
| KXG20955 | Sorghum | cytosol, extracellular, nucleus | 67.78 | 21.94 |
| Solyc03g032130.2.1 | Tomato | nucleus | 24.44 | 19.47 |
| Zm00001d011528_P001 | Maize | mitochondrion, plastid | 23.33 | 18.92 |
| Zm00001d002659_P001 | Maize | nucleus | 23.33 | 17.07 |
| Zm00001d043946_P001 | Maize | nucleus, plastid | 24.44 | 15.83 |
| Zm00001d006298_P001 | Maize | cytosol | 23.33 | 15.67 |
| Zm00001d051427_P002 | Maize | nucleus | 31.11 | 15.56 |
| Zm00001d017555_P001 | Maize | nucleus | 28.89 | 14.94 |
| Zm00001d052749_P001 | Maize | nucleus | 34.44 | 14.62 |
| PGSC0003DMT400043013 | Potato | nucleus | 36.67 | 14.16 |
| Zm00001d031233_P001 | Maize | vacuole | 31.11 | 12.5 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | UniProt:A0A1D6LMN4 | ProteinID:AQK80830.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0044212 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | PFAM:PF00505 |
| PFscan:PS50118 | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF284 | SUPFAM:SSF47095 | UniParc:UPI0008431291 | EnsemblPlantsGene:Zm00001d036355 |
| EnsemblPlants:Zm00001d036355_P001 | EnsemblPlants:Zm00001d036355_T001 | : | : | : | : |
Description
HMG-transcription factor 11High mobility group B protein 2
Coordinates
chr6:-:85387744..85388687
Molecular Weight (calculated)
9831.1 Da
IEP (calculated)
11.297
GRAVY (calculated)
-0.928
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MAEVRKGPGR YGREFKLGGG LAVKSKGAEK PTKGRKAKAG KDPNKPKRAP NAFFVLMGEF RKEFKEKNPK IKSVAAVGKA VGDRWKSLSE
001: MKTAKGKDKV KTTKEALKPV DDRKVGKRKA PAEKPTKRET RKEKKAKKDP NKPKRAPSAF FVFLEDFRVT FKKENPNVKA VSAVGKAGGQ KWKSMSQAEK
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE DDDDDDDEEE D
101: APYEEKAAKR KAEYEKQMDA YNKNLEEGSD ESEKSRSEIN DEDEASGEEE DDDDDDDEEE D
Arabidopsis Description
HMGB1high mobility group B1 [Source:TAIR;Acc:AT3G51880]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.