Factsheet for Zm00001d014858_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0728000-02	Rice	nucleus	95.54	95.54
TraesCS7A01G552400.1	Wheat	nucleus	91.08	88.82
TraesCSU01G099700.3	Wheat	nucleus	90.45	88.2
TraesCS7D01G538400.2	Wheat	nucleus	89.17	86.96
Zm00001d036355_P001	Maize	nucleus	40.76	71.11
AT1G20693.1	Thale cress	nucleus, plastid	61.78	67.36
VIT_04s0044g00110.t01	Wine grape	nucleus	61.78	62.99
PGSC0003DMT400003983	Potato	extracellular, nucleus	55.41	61.7
Solyc02g082700.2.1	Tomato	nucleus	54.78	61.43
CDY33643	Canola	nucleus, plastid	56.69	61.38
CDY29512	Canola	nucleus, plastid	53.5	61.31
Bra025838.1-P	Field mustard	nucleus, plastid	53.5	61.31
CDY65900	Canola	nucleus, plastid	56.05	61.11
HORVU7Hr1G121390.1	Barley	nucleus, plastid	86.62	60.99
CDX96626	Canola	nucleus, plastid	56.05	60.69
VIT_18s0122g01190.t01	Wine grape	nucleus	58.6	60.13
CDY01357	Canola	nucleus, plastid	52.23	58.16
KRH51597	Soybean	nucleus	57.96	57.96
Solyc03g032130.2.1	Tomato	nucleus	39.49	54.87
Bra012244.1-P	Field mustard	nucleus, plastid	34.39	54.55
KRH60915	Soybean	nucleus	61.15	53.04
Zm00001d021433_P002	Maize	nucleus	49.68	51.32
AT1G20696.2	Thale cress	nucleus, plastid	46.5	49.66
CDY31871	Canola	plastid	49.04	47.24
PGSC0003DMT400048091	Potato	nucleus	46.5	45.62
Zm00001d006306_P006	Maize	vacuole	47.13	42.29
Zm00001d006298_P001	Maize	cytosol	35.03	41.04
Zm00001d002659_P001	Maize	nucleus	26.75	34.15
Zm00001d017555_P001	Maize	nucleus	37.58	33.91
Zm00001d051427_P002	Maize	nucleus	37.58	32.78
Zm00001d043946_P001	Maize	nucleus, plastid	23.57	26.62
PGSC0003DMT400043013	Potato	nucleus	38.85	26.18
Zm00001d052749_P001	Maize	nucleus	34.39	25.47
Zm00001d011528_P001	Maize	mitochondrion, plastid	17.2	24.32
Zm00001d031233_P001	Maize	vacuole	24.2	16.96

Protein Annotations

Gene3D:1.10.30.10	EntrezGene:100381276	MapMan:35.2	EMBL:AF531431	ProteinID:AQK67326.1	EMBL:BT039653
EMBL:BT040237	EMBL:BT040724	EMBL:BT064677	EMBL:BT064710	EMBL:BT064951	EMBL:BT065799
ProteinID:CAB46752.1	ncoils:Coil	EMBL:EU952809	EMBL:EU956031	EMBL:EU958781	EMBL:EU959164
EMBL:EU959218	EMBL:EU959274	EMBL:EU966762	EMBL:EU968352	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0044212	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910	EMBL:KJ727492
UniProt:P27347	PFAM:PF00505	PRINTS:PR00886	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF284
UniProt:Q5NKN3	SMART:SM00398	SUPFAM:SSF47095	UniParc:UPI0000000332	EMBL:X58282	EMBL:X66077
EnsemblPlantsGene:Zm00001d014858	EnsemblPlants:Zm00001d014858_P001	EnsemblPlants:Zm00001d014858_T001	SEG:seg	:	:

Description

high mobility group protein1DNA-binding protein MNB1B

Coordinates

chr5:-:65680729..65683012

Molecular Weight (calculated)

17146.7 Da

IEP (calculated)

5.599

GRAVY (calculated)

-1.397

Length

157 amino acids

Sequence
(BLAST)

001: MKGAKSKGAA KADAKLAVKS KGAEKPAKGR KGKAGKDPNK PKRAPSAFFV FMEEFRKEFK EKNPKNKSVA AVGKAAGDRW KSLSESDKAP YVAKANKLKL
101: EYNKAIAAYN KGESTAAKKA PAKEEEEEDE EESDKSKSEV NDEDDEEGSE EDEDDDE

Best Arabidopsis Sequence Match ( AT1G20693.2 )
(BLAST)

001: MKGAKSKTET RSSKLSVTKK PAKGAGRGKA AAKDPNKPKR PASAFFVFME DFRETFKKEN PKNKSVATVG KAAGDKWKSL SDSEKAPYVA KAEKRKVEYE
101: KNIKAYNKKL EEGPKEDEES DKSVSEVNDE DDAEDGSEED DD

Arabidopsis Description

HMGB2High mobility group B protein 2 [Source:UniProtKB/Swiss-Prot;Acc:O49596]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.