Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009681.1-P | Field mustard | nucleus | 84.24 | 97.48 |
| CDX80362 | Canola | nucleus | 80.43 | 91.36 |
| CDY33643 | Canola | nucleus, plastid | 21.74 | 27.59 |
| CDX96626 | Canola | nucleus, plastid | 21.74 | 27.59 |
| CDY64875 | Canola | nucleus | 35.87 | 27.5 |
| CDY16851 | Canola | nucleus | 35.87 | 27.5 |
| CDY65900 | Canola | nucleus, plastid | 21.2 | 27.08 |
| CDY29512 | Canola | nucleus, plastid | 19.57 | 26.28 |
| CDY01357 | Canola | nucleus, plastid | 20.11 | 26.24 |
| CDY26814 | Canola | nucleus | 18.48 | 26.15 |
| CDY46957 | Canola | nucleus | 34.24 | 25.93 |
| CDY64458 | Canola | nucleus | 19.02 | 25.55 |
| CDY40795 | Canola | nucleus | 34.24 | 25.3 |
| CDY24349 | Canola | nucleus | 18.48 | 24.82 |
| AT5G23420.1 | Thale cress | nucleus, plastid | 32.07 | 24.48 |
| CDY30359 | Canola | nucleus | 17.93 | 24.26 |
| KRH36171 | Soybean | nucleus | 25.54 | 23.5 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 26.63 | 23.45 |
| CDX75512 | Canola | nucleus | 17.93 | 23.4 |
| CDX69149 | Canola | nucleus | 17.93 | 23.4 |
| CDY31871 | Canola | plastid | 20.65 | 23.31 |
| CDX90629 | Canola | nucleus | 21.74 | 23.26 |
| Os08t0101100-01 | Rice | nucleus | 25.54 | 23.15 |
| CDY29051 | Canola | nucleus | 21.74 | 22.86 |
| Solyc04g008820.2.1 | Tomato | nucleus | 26.63 | 22.79 |
| CDX78045 | Canola | nucleus | 21.74 | 22.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 23.91 | 22.11 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 25.0 | 21.3 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 25.0 | 21.3 |
| Zm00001d052749_P001 | Maize | nucleus | 24.46 | 21.23 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 24.46 | 20.93 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 27.17 | 20.92 |
| PGSC0003DMT400065103 | Potato | nucleus | 26.63 | 20.16 |
| EES14345 | Sorghum | nucleus | 23.91 | 19.91 |
| CDX72548 | Canola | plastid | 19.57 | 17.48 |
| CDY40620 | Canola | nucleus, plastid | 19.57 | 17.48 |
| KRH75844 | Soybean | cytosol | 9.78 | 15.79 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 23.37 | 14.83 |
Protein Annotations
| EnsemblPlants:CDX88025 | EnsemblPlantsGene:GSBRNA2T00147432001 | Gene3D:1.10.30.10 | InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 |
| InterPro:IPR036910 | ncoils:Coil | PANTHER:PTHR13711 | PANTHER:PTHR13711:SF147 | PFAM:PF00505 | PFscan:PS50118 |
| ProteinID:CDX88025 | ProteinID:CDX88025.1 | SEG:seg | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI0004EECA74 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA06g26160D
Coordinates
chrLK031854:-:168217..170830
Molecular Weight (calculated)
21123.8 Da
IEP (calculated)
8.304
GRAVY (calculated)
-1.032
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVSNAMSVE RFVNLTSDRD KKEMTNSNTL LRPKFVSAFA ICEGCNEKVT VKYRRLHKCS LHAAKIGTEA KKKPPTAFYF FMNDFRETYE EKNQHVNLKD
101: VPKLGGEMWK SFTEDEKNVY RDKAAQLMEE YNKSLESDDA DDVEEDEEKE VDNKTDAPNG CQNGRGRGRG RLVRGGRGRR SAFG
101: VPKLGGEMWK SFTEDEKNVY RDKAAQLMEE YNKSLESDDA DDVEEDEEKE VDNKTDAPNG CQNGRGRGRG RLVRGGRGRR SAFG
001: MSGASSEDSS IFARCEDVDC NKKIPVELVR MHICYAMFHR TLAARGFGTQ TQAKKKPTNK KKSTTSLTDF AVFMNHFRKS FRTDYNGALV KEGSKIGWEM
101: WKSMTEDEKK DYLDKAADEE DEDEDTVEEQ ADDSDDAEDN EVKETDDDN
101: WKSMTEDEKK DYLDKAADEE DEDEDTVEEQ ADDSDDAEDN EVKETDDDN
Arabidopsis Description
HMGB12High mobility group B protein 12 [Source:UniProtKB/Swiss-Prot;Acc:Q941D1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.