Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra039298.1-P | |
| Bra039299.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10480.1 | Bra039298.1-P | AT2G42395.1 | 21798944 |
| AT4G10480.1 | Bra039299.1-P | AT2G42395.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86860 | Canola | cytosol | 98.58 | 98.58 |
| Bra000711.1-P | Field mustard | cytosol, nucleus, plastid | 84.91 | 86.54 |
| AT4G10480.1 | Thale cress | cytosol | 81.6 | 81.6 |
| Bra012259.1-P | Field mustard | cytosol | 70.75 | 78.12 |
| HORVU4Hr1G084900.2 | Barley | mitochondrion | 45.75 | 70.8 |
| Solyc03g080160.2.1 | Tomato | nucleus | 64.15 | 66.67 |
| VIT_16s0098g00830.t01 | Wine grape | cytosol, nucleus, plastid | 65.57 | 66.19 |
| PGSC0003DMT400001566 | Potato | cytosol | 60.38 | 62.75 |
| GSMUA_Achr1P06350_001 | Banana | cytosol | 62.26 | 61.68 |
| Bra001450.1-P | Field mustard | cytosol | 54.25 | 60.85 |
| KRH64284 | Soybean | endoplasmic reticulum | 61.79 | 60.09 |
| Bra008797.1-P | Field mustard | cytosol | 58.49 | 59.62 |
| KRH64285 | Soybean | endoplasmic reticulum | 62.26 | 59.19 |
| Os03t0121700-01 | Rice | plasma membrane | 61.32 | 58.82 |
| KRH53644 | Soybean | endoplasmic reticulum | 61.79 | 58.74 |
| Bra038716.1-P | Field mustard | cytosol | 36.79 | 58.65 |
| TraesCS4D01G342400.1 | Wheat | nucleus | 59.91 | 57.21 |
| Bra034757.1-P | Field mustard | cytosol | 54.72 | 56.86 |
| TraesCS5A01G516100.1 | Wheat | nucleus | 59.43 | 56.76 |
| KRH53645 | Soybean | endoplasmic reticulum | 59.91 | 56.44 |
| TraesCS4B01G347400.1 | Wheat | nucleus | 58.49 | 56.36 |
| Zm00001d048479_P002 | Maize | plastid | 60.38 | 56.14 |
| EER95617 | Sorghum | cytosol | 58.96 | 55.31 |
| GSMUA_Achr5P20310_001 | Banana | mitochondrion | 43.87 | 46.97 |
| Os07t0407300-00 | Rice | cytosol, nucleus, plastid | 25.47 | 44.26 |
| GSMUA_Achr11P... | Banana | cytosol | 31.6 | 40.61 |
| HORVU3Hr1G102230.1 | Barley | nucleus | 15.57 | 33.33 |
| Os01t0698900-00 | Rice | plasma membrane | 50.94 | 28.27 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:19.1.2.1.1 | Gene3D:2.20.70.30 | EnsemblPlantsGene:Bra037920 | EnsemblPlants:Bra037920.1 | EnsemblPlants:Bra037920.1-P |
| InterPro:EGD2/NACA | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005854 |
| InterPro:IPR002715 | InterPro:IPR038187 | UniProt:M4FA06 | InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PFAM:PF01849 |
| PIRSF:PIRSF015901 | PFscan:PS51151 | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF7 | SMART:SM01407 | UniParc:UPI0002542426 |
| SEG:seg | : | : | : | : | : |
Description
AT4G10480 (E=5e-060) | nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative
Coordinates
chrA09:-:11674359..11675347
Molecular Weight (calculated)
23205.9 Da
IEP (calculated)
3.979
GRAVY (calculated)
-0.647
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGPVIEEVN TEEQLMDAIK EQMKLQNDDD VVVEDVKDGE EEDDIDDDED DNVDGAGENE SSKQSRSEKK SRKAMLKLGM KPVTDVSRVT IKRSKNVLFV
101: ISKPDVFKSP NSETYVIFGE AKIDDMSSQL QAQAAQRFKM PDVGSMIPNA DASEAVTVAQ EEEDDDDVDE TGVEAKDIDL VMTQAGVSKA KAVKALKTND
201: GDIVSAIMEL TT
101: ISKPDVFKSP NSETYVIFGE AKIDDMSSQL QAQAAQRFKM PDVGSMIPNA DASEAVTVAQ EEEDDDDVDE TGVEAKDIDL VMTQAGVSKA KAVKALKTND
201: GDIVSAIMEL TT
001: MPGPVIEEVN EEALMDAIKE QMKLQKENDV VVEDVKDGDE DDDDVDDDDD EIADAGENEA SKQSRSEKKS RKAMLKLGMK PVTDVSRVTI KRSKNVLFVI
101: SKPDVFKSPN SETYVIFGEA KIDDMSSQLQ AQAAQRFKMP DVASMIPNTD GSEAATVAQE EEDDEDVDET GVEAKDIDLV MTQAGVSRPK AVKALKESNG
201: DIVSAIMELT T
101: SKPDVFKSPN SETYVIFGEA KIDDMSSQLQ AQAAQRFKMP DVASMIPNTD GSEAATVAQE EEDDEDVDET GVEAKDIDLV MTQAGVSRPK AVKALKESNG
201: DIVSAIMELT T
Arabidopsis Description
Putative alpha NAC [Source:UniProtKB/TrEMBL;Acc:Q0WWN5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.