CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53645	Soybean	endoplasmic reticulum	83.49	80.89
KRH64285	Soybean	endoplasmic reticulum	80.28	78.48
KRH53644	Soybean	endoplasmic reticulum	80.28	78.48
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	70.64	73.33
CDY31855	Canola	cytosol	45.87	72.99
Solyc03g080160.2.1	Tomato	nucleus	66.97	71.57
PGSC0003DMT400001566	Potato	cytosol	64.68	69.12
Os03t0121700-01	Rice	plasma membrane	64.68	63.8
Zm00001d048479_P002	Maize	plastid	66.51	63.6
TraesCS4B01G347400.1	Wheat	nucleus	63.76	63.18
CDY31852	Canola	cytosol, nucleus, plastid	59.63	62.2
TraesCS5A01G516100.1	Wheat	nucleus	63.3	62.16
TraesCS4D01G342400.1	Wheat	nucleus	63.3	62.16
CDY01344	Canola	cytosol, nucleus, plastid	58.72	62.14
KRH66666	Soybean	endoplasmic reticulum	56.42	62.12
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	59.17	62.02
CDX90758	Canola	cytosol, nucleus, plastid	59.17	62.02
Bra012259.1-P	Field mustard	cytosol	54.59	61.98
KRG95031	Soybean	endoplasmic reticulum	57.34	61.88
CDX86860	Canola	cytosol	60.09	61.79
Bra037920.1-P	Field mustard	cytosol	60.09	61.79
CDY05102	Canola	cytosol, nucleus, plastid	57.8	61.76
EER95617	Sorghum	cytosol	63.76	61.5
KRH66664	Soybean	endoplasmic reticulum	56.88	61.08
AT3G49470.2	Thale cress	cytosol	64.22	60.34
KRG95032	Soybean	nucleus	55.05	58.54
CDX99543	Canola	nucleus	39.91	48.33
GSMUA_Achr11P...	Banana	cytosol	35.78	47.27
Os07t0407300-00	Rice	cytosol, nucleus, plastid	23.39	41.8
CDY54248	Canola	cytosol	42.2	41.44
HORVU3Hr1G102230.1	Barley	nucleus	18.35	40.4
Os01t0698900-00	Rice	plasma membrane	53.67	30.63

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100779560	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	EMBL:ACUP02002752	InterPro:EGD2/NACA
EnsemblPlantsGene:GLYMA_04G227300	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854
UniProt:I1JYG6	InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRH64284	ProteinID:KRH64284	ProteinID:KRH64284.1
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713
PANTHER:PTHR21713:SF7	SMART:SM01407	UniParc:UPI0002339C50	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:49689243..49691002

Molecular Weight (calculated)

23736.5 Da

IEP (calculated)

4.194

GRAVY (calculated)

-0.727

Length

218 amino acids

Sequence
(BLAST)

001: MSPGPVLDAG ADQQIPFVDD ASLKKKPHPL EDDAPIVEDV KDDDKDETED EDEDDDDKED DAQGAAEGGK QSRSEKKSRK AMLKLGLKPV TGVSRVTIKR
101: TKNILFFISK PDVFKSPNSE TYVIFGEAKI EDLSSQLQTQ AAQQFRMPDV ESVLAKQDQD AAAAAAQPEE EEEVDETGVE PHDIDLVMTQ AGVSRSKAVK
201: ALKTHNGDIV GAIMELTT

Best Arabidopsis Sequence Match ( AT1G33040.1 )
(BLAST)

001: MPGAIVEEEK SQIESIKEQL KLEKEDDVVV EDVKDGEEED DDEDDEDVEV EGEGGNENAK QSRSEKKSRK AVLKLGMKPV SDVSRVTIKR AKNVLFVISK
101: PDVYKSPNAE TYVIFGEAKV DDLSSQLQTQ AAQRFKMPDV TSMLPNAGSE ATMAPLAEEE DEDDVDDTGV EARDIDLVMT QAGVSKAKAV SALKANDGDI
201: VSAIMELTT

Arabidopsis Description

NACA5Nascent polypeptide-associated complex subunit alpha-like protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8LGC6]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.