CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53644	Soybean	endoplasmic reticulum	83.11	83.86
KRH64284	Soybean	endoplasmic reticulum	80.89	83.49
KRH64285	Soybean	endoplasmic reticulum	82.67	83.41
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	67.11	71.9
CDY31855	Canola	cytosol	43.56	71.53
Solyc03g080160.2.1	Tomato	nucleus	64.44	71.08
PGSC0003DMT400001566	Potato	cytosol	64.0	70.59
TraesCS4B01G347400.1	Wheat	nucleus	62.67	64.09
TraesCS4D01G342400.1	Wheat	nucleus	62.67	63.51
TraesCS5A01G516100.1	Wheat	nucleus	62.22	63.06
Os03t0121700-01	Rice	plasma membrane	61.78	62.9
KRG95031	Soybean	endoplasmic reticulum	56.44	62.87
KRH66666	Soybean	endoplasmic reticulum	55.11	62.63
Zm00001d048479_P002	Maize	plastid	63.11	62.28
CDY31852	Canola	cytosol, nucleus, plastid	56.89	61.24
KRH66664	Soybean	endoplasmic reticulum	55.11	61.08
Bra037920.1-P	Field mustard	cytosol	56.44	59.91
Bra012259.1-P	Field mustard	cytosol	51.11	59.9
EER95617	Sorghum	cytosol	60.0	59.73
CDY01344	Canola	cytosol, nucleus, plastid	54.67	59.71
KRG95032	Soybean	nucleus	54.22	59.51
AT3G49470.2	Thale cress	cytosol	61.33	59.48
CDX86860	Canola	cytosol	56.0	59.43
CDX90758	Canola	cytosol, nucleus, plastid	54.67	59.13
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	54.67	59.13
CDY05102	Canola	cytosol, nucleus, plastid	53.33	58.82
CDX99543	Canola	nucleus	38.22	47.78
GSMUA_Achr11P...	Banana	cytosol	32.89	44.85
Os07t0407300-00	Rice	cytosol, nucleus, plastid	23.56	43.44
HORVU3Hr1G102230.1	Barley	nucleus	18.67	42.42
CDY54248	Canola	cytosol	40.44	40.99
Os01t0698900-00	Rice	plasma membrane	51.11	30.1

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	EMBL:ACUP02003480	InterPro:EGD2/NACA	EnsemblPlantsGene:GLYMA_06G137800
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	UniProt:I1KB26
InterPro:IPR002715	InterPro:IPR038187	EnsemblPlants:KRH53645	ProteinID:KRH53645	ProteinID:KRH53645.1	InterPro:NAC_A/B_dom_sf
InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF7
SMART:SM01407	UniParc:UPI00023C2895	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:11256198..11258210

Molecular Weight (calculated)

24377.1 Da

IEP (calculated)

4.128

GRAVY (calculated)

-0.770

Length

225 amino acids

Sequence
(BLAST)

001: MSPGPVIDAA TDPGADQQIP SVDDAILKKK AHPQEDDAPI VEDVKDDDKE ETEDEDEDDD DDDKEDDAQG GAEGGKQSRS EKKSRKAMLK LGLKPVTGVS
101: RVTIKRTKNI LFFISKPDVF KSPNSETYII FGEAKIEDLS SQLQTQAAQQ FRMPDVGSVL AKQDQDAAAA AAQPEEEEEE VDETGVEPHD IDLVMTQAGV
201: SRSKAVKALK THNGDIVGAI MELTT

Best Arabidopsis Sequence Match ( AT3G49470.1 )
(BLAST)

001: MSPPPAVVTE SADGQPEQPP VTAIAEELEK KLQTDEPIVE DVKDDEDDDD DDEEEEDDDA QGVSGSSKQS RSEKKSRKAM LKLGMKPVTG VSRVTIKRTK
101: NVLFFISKPD VFKSPHSETY VIFGEAKIED LSSQLQTQAA QQFRMPEIGA TSQRAEASTA TVEAQVEEDE EEIDETGVEA RDIDLVMTQA GVSRSKAVKA
201: LKSHDGDIVS AIMELTT

Arabidopsis Description

NACA2Nascent polypeptide-associated complex subunit alpha-like protein 2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.