CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	100.0	100.0
CDY05102	Canola	cytosol, nucleus, plastid	95.67	97.55
CDY31855	Canola	cytosol	59.62	90.51
CDY31852	Canola	cytosol, nucleus, plastid	89.42	89.0
CDY01344	Canola	cytosol, nucleus, plastid	87.5	88.35
CDX86860	Canola	cytosol	87.02	85.38
AT1G33040.1	Thale cress	cytosol, nucleus, plastid	75.48	75.12
HORVU4Hr1G084900.2	Barley	mitochondrion	47.12	71.53
CDX99543	Canola	nucleus	61.54	71.11
Solyc03g080160.2.1	Tomato	nucleus	65.87	67.16
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	66.83	66.19
GSMUA_Achr1P06350_001	Banana	cytosol	65.87	64.02
PGSC0003DMT400001566	Potato	cytosol	62.02	63.24
CDX73823	Canola	cytosol	60.1	62.19
CDY00769	Canola	cytosol	60.1	62.19
CDY09831	Canola	nucleus	59.62	60.19
CDY50549	Canola	nucleus	58.17	59.9
CDY71160	Canola	nucleus	58.17	59.9
KRH64284	Soybean	endoplasmic reticulum	62.02	59.17
CDY42148	Canola	nucleus	57.69	59.11
CDY08433	Canola	plasma membrane	57.69	58.82
CDX69622	Canola	cytosol	58.17	58.74
TraesCS4D01G342400.1	Wheat	nucleus	62.5	58.56
Os03t0121700-01	Rice	plasma membrane	61.54	57.92
KRH64285	Soybean	endoplasmic reticulum	62.02	57.85
TraesCS5A01G516100.1	Wheat	nucleus	61.54	57.66
KRH53644	Soybean	endoplasmic reticulum	61.54	57.4
TraesCS4B01G347400.1	Wheat	nucleus	60.58	57.27
EER95617	Sorghum	cytosol	59.62	54.87
KRH53645	Soybean	endoplasmic reticulum	59.13	54.67
Zm00001d048479_P002	Maize	plastid	59.62	54.39
GSMUA_Achr5P20310_001	Banana	mitochondrion	42.79	44.95
Os07t0407300-00	Rice	cytosol, nucleus, plastid	25.0	42.62
GSMUA_Achr11P...	Banana	cytosol	32.21	40.61
CDY54248	Canola	cytosol	43.27	40.54
HORVU3Hr1G102230.1	Barley	nucleus	18.27	38.38
Os01t0698900-00	Rice	plasma membrane	50.0	27.23

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	EnsemblPlants:CDX90758	ProteinID:CDX90758	ProteinID:CDX90758.1
InterPro:EGD2/NACA	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854
EnsemblPlantsGene:GSBRNA2T00151452001	InterPro:IPR002715	InterPro:IPR038187	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849
PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF7	SMART:SM01407	UniParc:UPI0002540359
SEG:seg	:	:	:	:	:

Description

BnaA03g24380D

Coordinates

chrLK031864:-:361768..362962

Molecular Weight (calculated)

22632.3 Da

IEP (calculated)

4.063

GRAVY (calculated)

-0.650

Length

208 amino acids

Sequence
(BLAST)

001: MPGPVVEEVK IEEAIKEQMK LEKEDDVVVE DVKDGDEDVD DDDNDDDNVD GAGDNESSKQ SRSEKKSRKA MLKLGMKPVT DVSRVTIKRS KNVLFVISKP
101: DVFKSPNSET YVIFGEAKID DMSSQLQAQA AQRFKMPDVA SMIPNSDASE AAAVAQEEDE DDDVDETGVE AKDVELVMTQ AGVSKAKATK ALKANDGDIV
201: SAIMELTT

Best Arabidopsis Sequence Match ( AT4G10480.2 )
(BLAST)

001: MPGPVIEEVN EEALMDAIKE QMKLQKENDV VVEDVKDGDE DDDDVDDDDD EIADAGENEA SKQSRSEKKS RKAMLKLGMK PVTDVSRVTI KRSKNVLFVI
101: SKPDVFKSPN SETYVIFGEA KIDDMSSQLQ AQAAQRFKMP DVASMIPNTD GSEAATVAQE EEDDEDVDET GVEAKDIDLV MTQAGVSRPK AVKALKESNG
201: DIVSAIMELT T

Arabidopsis Description

Putative alpha NAC [Source:UniProtKB/TrEMBL;Acc:Q0WWN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.