Factsheet for Solyc03g080160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001566	Potato	cytosol	87.75	87.75
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	79.9	77.62
CDY31855	Canola	cytosol	49.02	72.99
KRH53644	Soybean	endoplasmic reticulum	74.51	68.16
KRH64285	Soybean	endoplasmic reticulum	74.02	67.71
CDY31852	Canola	cytosol, nucleus, plastid	68.63	66.99
KRH64284	Soybean	endoplasmic reticulum	71.57	66.97
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	67.16	65.87
CDX90758	Canola	cytosol, nucleus, plastid	67.16	65.87
Solyc10g081030.1.1	Tomato	nucleus	63.73	65.33
CDY01344	Canola	cytosol, nucleus, plastid	65.69	65.05
CDY05102	Canola	cytosol, nucleus, plastid	64.71	64.71
KRH53645	Soybean	endoplasmic reticulum	71.08	64.44
Bra037920.1-P	Field mustard	cytosol	66.67	64.15
CDX86860	Canola	cytosol	66.18	63.68
Solyc10g078150.1.1	Tomato	nucleus	61.76	63.64
Os03t0121700-01	Rice	plasma membrane	68.63	63.35
Bra012259.1-P	Field mustard	cytosol	59.31	63.02
TraesCS4B01G347400.1	Wheat	nucleus	67.16	62.27
TraesCS4D01G342400.1	Wheat	nucleus	67.65	62.16
EER95617	Sorghum	cytosol	68.63	61.95
TraesCS5A01G516100.1	Wheat	nucleus	67.16	61.71
Zm00001d048479_P002	Maize	plastid	68.63	61.4
AT3G49470.2	Thale cress	cytosol	66.67	58.62
CDX99543	Canola	nucleus	46.57	52.78
GSMUA_Achr11P...	Banana	cytosol	37.75	46.67
Os07t0407300-00	Rice	cytosol, nucleus, plastid	25.98	43.44
CDY54248	Canola	cytosol	45.59	41.89
HORVU3Hr1G102230.1	Barley	nucleus	18.63	38.38
Os01t0698900-00	Rice	plasma membrane	58.33	31.15

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	InterPro:EGD2/NACA	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187	UniProt:K4BHZ2
InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151	PANTHER:PTHR21713
PANTHER:PTHR21713:SF7	SMART:SM01407	EnsemblPlantsGene:Solyc03g080160.2	EnsemblPlants:Solyc03g080160.2.1	UniParc:UPI0002768365	SEG:seg

Description

No Description!

Coordinates

chr3:-:52051864..52053772

Molecular Weight (calculated)

22329.8 Da

IEP (calculated)

4.152

GRAVY (calculated)

-0.770

Length

204 amino acids

Sequence
(BLAST)

001: MPGPVIEELE AEKKIQEDEP IVEDVKEEDD HDDDADDSDD DEDDDKEDGA QGGNSKQSRS EKKSRKAMLK LGMKPVTGVS RVTIKRTKNV LFFISKPDVF
101: KSPNSETYVI FGEAKIEDLS SQLQTQAAQQ FRMPDMGSVM AKPDVSGSNA AAEADEEEEV DETGVEPRDI DLVLTQAGVS RTKAVKALKA HNGDIVSAIM
201: ELTT

Best Arabidopsis Sequence Match ( AT3G49470.1 )
(BLAST)

001: MSPPPAVVTE SADGQPEQPP VTAIAEELEK KLQTDEPIVE DVKDDEDDDD DDEEEEDDDA QGVSGSSKQS RSEKKSRKAM LKLGMKPVTG VSRVTIKRTK
101: NVLFFISKPD VFKSPHSETY VIFGEAKIED LSSQLQTQAA QQFRMPEIGA TSQRAEASTA TVEAQVEEDE EEIDETGVEA RDIDLVMTQA GVSRSKAVKA
201: LKSHDGDIVS AIMELTT

Arabidopsis Description

NACA2Nascent polypeptide-associated complex subunit alpha-like protein 2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.