Factsheet for VIT_16s0098g00830.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g080160.2.1	Tomato	nucleus	77.62	79.9
PGSC0003DMT400001566	Potato	cytosol	72.86	75.0
CDY31855	Canola	cytosol	46.19	70.8
KRH64284	Soybean	endoplasmic reticulum	73.33	70.64
KRH53644	Soybean	endoplasmic reticulum	74.29	69.96
KRH64285	Soybean	endoplasmic reticulum	73.33	69.06
KRH53645	Soybean	endoplasmic reticulum	71.9	67.11
Bra000711.1-P	Field mustard	cytosol, nucleus, plastid	66.19	66.83
CDX90758	Canola	cytosol, nucleus, plastid	66.19	66.83
Bra037920.1-P	Field mustard	cytosol	66.19	65.57
VIT_13s0067g00710.t01	Wine grape	nucleus	62.86	65.35
VIT_08s0040g00600.t01	Wine grape	cytosol	62.86	65.35
CDY05102	Canola	cytosol, nucleus, plastid	63.33	65.2
Os03t0121700-01	Rice	plasma membrane	68.57	65.16
CDX86860	Canola	cytosol	65.71	65.09
EER95617	Sorghum	cytosol	69.52	64.6
CDY31852	Canola	cytosol, nucleus, plastid	63.33	63.64
Zm00001d048479_P002	Maize	plastid	69.05	63.6
TraesCS4B01G347400.1	Wheat	nucleus	65.71	62.73
CDY01344	Canola	cytosol, nucleus, plastid	61.43	62.62
TraesCS4D01G342400.1	Wheat	nucleus	65.71	62.16
TraesCS5A01G516100.1	Wheat	nucleus	65.71	62.16
Bra012259.1-P	Field mustard	cytosol	55.24	60.42
AT3G49470.2	Thale cress	cytosol	65.24	59.05
CDX99543	Canola	nucleus	46.19	53.89
GSMUA_Achr11P...	Banana	cytosol	37.14	47.27
Os07t0407300-00	Rice	cytosol, nucleus, plastid	25.24	43.44
CDY54248	Canola	cytosol	45.71	43.24
HORVU3Hr1G102230.1	Barley	nucleus	18.57	39.39
Os01t0698900-00	Rice	plasma membrane	56.19	30.89

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100854239	wikigene:100854239	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	ProteinID:CBI23098
ProteinID:CBI23098.3	UniProt:E0CVD7	InterPro:EGD2/NACA	EMBL:FN595247	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187	EntrezGene:LOC100854239
wikigene:LOC100854239	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901	PFscan:PS51151
PANTHER:PTHR21713	PANTHER:PTHR21713:SF7	SMART:SM01407	TIGR:TC51933	UniParc:UPI0001984F79	ArrayExpress:VIT_16s0098g00830
EnsemblPlantsGene:VIT_16s0098g00830	EnsemblPlants:VIT_16s0098g00830.t01	unigene:Vvi.1972	RefSeq:XP_003634163	RefSeq:XP_003634163.1	SEG:seg

Description

No Description!

Coordinates

chr16:-:21156331..21158316

Molecular Weight (calculated)

23070.8 Da

IEP (calculated)

4.126

GRAVY (calculated)

-0.747

Length

210 amino acids

Sequence
(BLAST)

001: MPEAEAEQVA SLEEDLQKKK LLEEEPVVED VKDEEEDDDD DEDDEDDEKE DGAQGANEGS KQSRSEKKSR KAMLKLGMKP VTGVGRVTIK RTKNILFFIS
101: KPDVFKSPNS ETYVIFGEAK IEDLSSQLQT QAAQQFRMPD MGSVMAKSDI SAAAAGTQAD EEEEVIDETG VEPRDIDLVM TQAGVSRSKA VKALKTHNGD
201: IVSAIMELTT

Best Arabidopsis Sequence Match ( AT3G49470.1 )
(BLAST)

001: MSPPPAVVTE SADGQPEQPP VTAIAEELEK KLQTDEPIVE DVKDDEDDDD DDEEEEDDDA QGVSGSSKQS RSEKKSRKAM LKLGMKPVTG VSRVTIKRTK
101: NVLFFISKPD VFKSPHSETY VIFGEAKIED LSSQLQTQAA QQFRMPEIGA TSQRAEASTA TVEAQVEEDE EEIDETGVEA RDIDLVMTQA GVSRSKAVKA
201: LKSHDGDIVS AIMELTT

Arabidopsis Description

NACA2Nascent polypeptide-associated complex subunit alpha-like protein 2 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LR04]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.