Factsheet for VIT_08s0040g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11330_001	Banana	plasma membrane	83.66	84.5
GSMUA_Achr10P...	Banana	nucleus	83.17	84.0
VIT_13s0067g00710.t01	Wine grape	nucleus	83.17	83.17
Solyc10g081030.1.1	Tomato	nucleus	80.69	81.91
KRH66666	Soybean	endoplasmic reticulum	79.21	80.81
Solyc10g078150.1.1	Tomato	nucleus	78.22	79.8
PGSC0003DMT400018552	Potato	nucleus	77.23	78.79
KRG95031	Soybean	endoplasmic reticulum	78.22	78.22
KRG95032	Soybean	nucleus	79.21	78.05
KRH66664	Soybean	endoplasmic reticulum	77.72	77.34
TraesCS1D01G236500.1	Wheat	cytosol	78.22	77.07
HORVU1Hr1G057970.2	Barley	nucleus	79.21	76.56
TraesCS1B01G248000.1	Wheat	golgi, plastid, unclear	76.73	75.61
AT3G12390.1	Thale cress	cytosol	74.75	74.38
Os01t0938900-02	Rice	nucleus	74.26	74.26
PGSC0003DMT400072220	Potato	cytosol, endoplasmic reticulum, nucleus	73.27	74.0
CDY09831	Canola	nucleus	75.25	73.79
Os05t0373700-01	Rice	extracellular, golgi, plasma membrane, plastid	74.75	73.66
EES15306	Sorghum	nucleus	75.25	73.43
AT5G13850.1	Thale cress	cytosol	73.76	73.04
EER94856	Sorghum	nucleus	74.75	72.95
Zm00001d047477_P001	Maize	plastid	73.27	72.91
Zm00001d029173_P004	Maize	nucleus	73.27	71.5
CDY50549	Canola	nucleus	71.29	71.29
CDY71160	Canola	nucleus	70.79	70.79
CDX69622	Canola	cytosol	71.78	70.39
Bra008797.1-P	Field mustard	cytosol	72.28	70.19
TraesCS4A01G138000.1	Wheat	plastid, unclear	71.78	69.71
CDY00769	Canola	cytosol	69.31	69.65
CDX73823	Canola	cytosol	69.31	69.65
TraesCS4B01G154200.1	Wheat	nucleus	70.79	69.42
Zm00001d049830_P002	Maize	extracellular	71.29	69.23
TraesCS3B01G518300.1	Wheat	cytosol, nucleus, plastid	67.82	68.84
TraesCS4D01G164400.1	Wheat	nucleus	70.3	68.6
CDY42148	Canola	nucleus	68.81	68.47
TraesCS3A01G474500.1	Wheat	nucleus	64.36	68.42
Bra038716.1-P	Field mustard	cytosol	45.05	68.42
TraesCS3D01G470600.2	Wheat	cytosol	64.85	68.23
Bra001450.1-P	Field mustard	cytosol	63.37	67.72
Bra034757.1-P	Field mustard	cytosol	68.32	67.65
CDY08433	Canola	plasma membrane	68.32	67.65
TraesCS3B01G518000.1	Wheat	cytosol, nucleus, plastid	67.33	67.0
HORVU3Hr1G102520.6	Barley	cytosol, nucleus	67.33	65.7
TraesCS3A01G474200.1	Wheat	nucleus	64.36	65.66
TraesCS3D01G470500.1	Wheat	cytosol, nucleus, plastid	60.4	64.89
TraesCS3A01G474600.1	Wheat	cytosol	63.86	64.82
TraesCSU01G140100.1	Wheat	nucleus	63.37	64.32
TraesCS3B01G518200.1	Wheat	cytosol	41.58	63.64
TraesCS3B01G517400.1	Wheat	cytosol	62.38	63.32
VIT_16s0098g00830.t01	Wine grape	cytosol, nucleus, plastid	65.35	62.86
TraesCS3B01G518400.1	Wheat	cytosol	60.89	62.76
HORVU2Hr1G015260.1	Barley	cytosol, nucleus, plastid	61.39	61.39
TraesCS3A01G474800.1	Wheat	cytosol, nucleus, plastid	59.41	59.41
TraesCSU01G140000.1	Wheat	nucleus	55.45	55.17
TraesCS3B01G517500.1	Wheat	cytosol, golgi, nucleus	53.47	48.0

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100243098	wikigene:100243098	MapMan:19.1.2.1.1	Gene3D:2.20.70.30	ProteinID:CCB57142
ProteinID:CCB57142.1	ncoils:Coil	InterPro:EGD2/NACA	UniProt:F6HQR1	EMBL:FN596008	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005854	InterPro:IPR002715	InterPro:IPR038187
EntrezGene:LOC100243098	wikigene:LOC100243098	InterPro:NAC_A/B_dom_sf	InterPro:Nas_poly-pep-assoc_cplx_dom	PFAM:PF01849	PIRSF:PIRSF015901
PFscan:PS51151	PANTHER:PTHR21713	PANTHER:PTHR21713:SF16	SMART:SM01407	TIGR:TC52240	TIGR:TC54927
UniParc:UPI000210803C	ArrayExpress:VIT_08s0040g00600	EnsemblPlantsGene:VIT_08s0040g00600	EnsemblPlants:VIT_08s0040g00600.t01	unigene:Vvi.7630	RefSeq:XP_002283581
RefSeq:XP_002283581.2	RefSeq:XP_003632619	RefSeq:XP_003632619.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:11543926..11547568

Molecular Weight (calculated)

22021.3 Da

IEP (calculated)

4.045

GRAVY (calculated)

-0.786

Length

202 amino acids

Sequence
(BLAST)

001: MTAQTQEELL AAHLEEQKIN PDEPVVEDED DEDDDDDDDD DDKDEDDAEG QDDGSGRSKQ SRSEKKSRKA MLKLGMKTIP GVSRVTIKKS KNILFVISKP
101: DVFKSPTSDT YVIFGEAKIE DLSSQLQTQA AEQFKAPNVH PAAAQPETAA VVQDDEEVDE TGVEPKDIDL VMTQAGVSRS KAVKALKAAD GDIVSAIMEL
201: TN

Best Arabidopsis Sequence Match ( AT3G12390.1 )
(BLAST)

001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT

Arabidopsis Description

Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.