Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G140100.1 | Wheat | nucleus | 88.38 | 87.94 |
| TraesCS3B01G517400.1 | Wheat | cytosol | 87.88 | 87.44 |
| TraesCS3A01G474500.1 | Wheat | nucleus | 70.71 | 73.68 |
| Os01t0938900-02 | Rice | nucleus | 72.22 | 70.79 |
| TraesCS3A01G474600.1 | Wheat | cytosol | 70.71 | 70.35 |
| KRH66666 | Soybean | endoplasmic reticulum | 68.69 | 68.69 |
| Solyc10g078150.1.1 | Tomato | nucleus | 68.18 | 68.18 |
| PGSC0003DMT400018552 | Potato | nucleus | 67.68 | 67.68 |
| GSMUA_Achr10P... | Banana | nucleus | 68.18 | 67.5 |
| AT3G12390.1 | Thale cress | cytosol | 68.69 | 67.0 |
| Solyc10g081030.1.1 | Tomato | nucleus | 67.17 | 66.83 |
| TraesCS3A01G474800.1 | Wheat | cytosol, nucleus, plastid | 68.18 | 66.83 |
| GSMUA_Achr1P11330_001 | Banana | plasma membrane | 67.17 | 66.5 |
| KRG95031 | Soybean | endoplasmic reticulum | 66.67 | 65.35 |
| VIT_13s0067g00710.t01 | Wine grape | nucleus | 66.67 | 65.35 |
| VIT_08s0040g00600.t01 | Wine grape | cytosol | 65.66 | 64.36 |
| KRG95032 | Soybean | nucleus | 66.16 | 63.9 |
| CDX73823 | Canola | cytosol | 64.14 | 63.18 |
| CDY00769 | Canola | cytosol | 64.14 | 63.18 |
| KRH66664 | Soybean | endoplasmic reticulum | 64.65 | 63.05 |
| CDY09831 | Canola | nucleus | 65.15 | 62.62 |
| Bra001450.1-P | Field mustard | cytosol | 59.09 | 61.9 |
| CDY42148 | Canola | nucleus | 63.13 | 61.58 |
| CDY50549 | Canola | nucleus | 62.63 | 61.39 |
| AT5G13850.1 | Thale cress | cytosol | 63.13 | 61.27 |
| CDX69622 | Canola | cytosol | 63.64 | 61.16 |
| CDY71160 | Canola | nucleus | 62.12 | 60.89 |
| CDY08433 | Canola | plasma membrane | 62.63 | 60.78 |
| Bra034757.1-P | Field mustard | cytosol | 62.63 | 60.78 |
| Bra008797.1-P | Field mustard | cytosol | 63.64 | 60.58 |
| PGSC0003DMT400072220 | Potato | cytosol, endoplasmic reticulum, nucleus | 60.1 | 59.5 |
| Bra038716.1-P | Field mustard | cytosol | 38.89 | 57.89 |
| TraesCS4A01G138000.1 | Wheat | plastid, unclear | 59.6 | 56.73 |
| GSMUA_Achr5P17540_001 | Banana | endoplasmic reticulum, extracellular, golgi | 66.67 | 55.23 |
| TraesCS5A01G516100.1 | Wheat | nucleus | 51.01 | 45.5 |
| TraesCS3A01G474900.1 | Wheat | cytosol | 30.81 | 43.26 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G474200.1 | EnsemblPlantsGene:TraesCS3A01G474200 | Gene3D:1.10.8.10 | Gene3D:2.20.70.30 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005854 | InterPro:EGD2/NACA | InterPro:IPR002715 | InterPro:IPR038187 |
| InterPro:NAC_A/B_dom_sf | InterPro:Nas_poly-pep-assoc_cplx_dom | PANTHER:PTHR21713 | PANTHER:PTHR21713:SF16 | PFAM:PF01849 | PFscan:PS51151 |
| PIRSF:PIRSF015901 | SEG:seg | SMART:SM01407 | TIGR:cd14358 | MapMan:19.1.2.1.1 | : |
Description
No Description!
Coordinates
chr3A:-:705309094..705311853
Molecular Weight (calculated)
21823.0 Da
IEP (calculated)
3.998
GRAVY (calculated)
-0.799
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVAELLRAD LEEHEIEEDE PILEDDDDDE DDTEDEDEKD DDDVEGGDAG GRSRQSRSEK KSRKAMEKLG MKAITGVSRV TIKKSKTVMY VLSKPDVFKS
101: SQSDTYVMFG ELKVEDPSTQ LPTQAAEQFK APGPSSVISK DEPSVATAQD DEEVDDTDVD QKDVELVMTQ TSVSRSRAVK VLKAVDGDIV SAIMELTN
101: SQSDTYVMFG ELKVEDPSTQ LPTQAAEQFK APGPSSVISK DEPSVATAQD DEEVDDTDVD QKDVELVMTQ TSVSRSRAVK VLKAVDGDIV SAIMELTN
001: MTTEEKEILA AKLEEQKIDL DKPEVEDDDD NEDDDSDDDD KDDDEADGLD GEAGGKSKQS RSEKKSRKAM LKLGMKPITG VSRVTVKKSK NILFVISKPD
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
101: VFKSPASDTY VIFGEAKIED LSSQIQSQAA EQFKAPDLSN VISKGESSSA AVVQDDEEVD EEGVEPKDIE LVMTQAGVSR PNAVKALKAA DGDIVSAIME
201: LTT
Arabidopsis Description
Nascent polypeptide-associated complex subunit alpha-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHG9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.